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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0345400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.75 (0.0636) R2 : 0.815
β1 : -1.24 (0.231) R2dD : 0.0123 R2D : -0.0287
β2 : 15.1 (0.362) R2dC : 3.78 R2C : -3.44
β3 : -19.6 (0.442) R2dE : 4.25 R2E : -2.99
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.306 (0.135) R2dN8 : 0.00223 R2N8 : -0.0196
σ : 1.18
deviance : 640.3
__
_____
C
peak time of C : 8.82
E
wheather : radiation
threshold : 0.1694
memory length : 776
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.45
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
640.1 1.19 6.8 -1.27 14.2 -18.2 0.54 0.745 0.264 9.05 0.17 770 3.06 --
638.67 1.18 6.8 -1.26 13.9 -18 1.23 -- 0.306 9.04 0.1693 772 3.25 --
638.51 1.18 6.82 -1.24 13.8 -17.7 -- 1.36 0.258 9.05 0.1692 772 3.24 --
640.3 1.18 6.75 -1.24 15.1 -19.6 -- -- 0.306 8.82 0.1694 776 3.45 --
1376.39 1.73 7.43 -2.75 -- -12 -- 0.966 -1.3 -- 1.893 4573 2.07 --
914.21 1.42 7.12 -0.49 6.56 -- 1.04 -- 0.651 14.8 -- -- -- --
917.95 1.42 7.12 -0.465 6.57 -- -- -- 0.657 14.8 -- -- -- --
835.95 1.35 7.32 -0.861 -- -8.73 -- -- -0.262 -- 2.644 4692 6 --
677.61 1.21 6.77 -- 13.6 -17.8 -- -- 0.431 8.96 0.17 781 3.67 --
3414.46 2.73 7.15 -0.745 -- -- -- -- 0.489 -- -- -- -- --
923.66 1.42 7.11 -- 6.57 -- -- -- 0.709 14.8 -- -- -- --
854.29 1.36 7.29 -- -- -8.51 -- -- -0.147 -- 2.95 4697 6.17 --
3429.11 2.73 7.13 -- -- -- -- -- 0.572 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 656.96 atmosphere 1005.0 14400 < th dose independent rect. 16 1
2 661.24 atmosphere 1005.0 14400 > th dose independent rect. 16 1
9 668.01 atmosphere 1005.0 14400 > th dose independent rect. 12 6
10 668.04 atmosphere 1005.0 14400 < th dose independent rect. 12 6
32 673.96 atmosphere 1000.0 14400 > th dose dependent rect. 17 2
43 675.26 precipitation 0.1 43200 > th dose independent rect. 15 1
44 675.26 precipitation 0.1 43200 > th dose dependent rect. 15 1
56 676.15 precipitation 0.1 43200 < th dose independent rect. 15 1
57 676.15 precipitation 0.1 43200 < th dose dependent rect. 15 1
58 676.23 precipitation 0.1 43200 > th dose independent rect. 13 3
59 676.35 precipitation 0.1 43200 < th dose independent rect. 12 5
60 676.35 precipitation 0.1 43200 < th dose dependent rect. 12 5
61 676.43 precipitation 0.1 43200 < th dose independent rect. 13 3
62 676.43 precipitation 0.1 43200 < th dose dependent rect. 13 3
64 676.55 precipitation 0.1 43200 > th dose independent rect. 12 5
65 676.60 precipitation 0.1 43200 > th dose dependent rect. 13 3
130 681.71 atmosphere 1005.0 14400 > th dose independent rect. 12 2
150 683.01 atmosphere 1005.0 14400 < th dose independent rect. 12 1
154 683.06 atmosphere 1015.0 14400 < th dose dependent rect. 18 1
196 684.20 atmosphere 1000.0 14400 > th dose dependent sin 19 NA
316 687.25 radiation 20.0 43200 > th dose independent rect. 17 14
332 687.48 radiation 20.0 43200 > th dose independent rect. 6 1
494 689.44 atmosphere 1000.0 14400 > th dose dependent no NA NA
522 689.99 wind 9.0 43200 < th dose independent rect. 18 1
565 690.74 atmosphere 1005.0 14400 > th dose independent sin 21 NA
574 690.98 wind 9.0 43200 > th dose independent rect. 18 1
767 694.20 atmosphere 1000.0 14400 > th dose dependent rect. 3 2
791 694.49 wind 7.0 43200 > th dose dependent rect. 18 1
814 694.72 atmosphere 1015.0 14400 < th dose dependent sin 17 NA
817 694.74 wind 3.0 14400 > th dose dependent rect. 14 1
895 695.52 radiation 10.0 43200 < th dose dependent rect. 13 1
947 695.97 atmosphere 1005.0 14400 < th dose independent sin 20 NA
965 696.14 atmosphere 1000.0 14400 > th dose dependent rect. 24 5