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Os04g0345100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.018) R2 : 0.329
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.661 (0.0471) R2dC : 0.292 R2C : 0.272
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.207 (0.0378) R2dN8 : 0.0568 R2N8 : 0.0373
σ : 0.339
deviance : 52.41
__
_____
C
peak time of C : 6.12
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.89 0.315 11.4 -0.176 0.49 0.473 -0.45 0.373 -0.129 7.47 88.29 44 -- --
45.27 0.313 11.4 -0.162 0.486 0.496 -0.414 -- -0.118 7.53 88 47 -- --
45.42 0.314 11.4 -0.183 0.494 0.461 -- 0.356 -0.133 7.44 88 43 -- --
45.77 0.315 11.4 -0.169 0.492 0.479 -- -- -0.125 7.43 88 43 -- --
56.72 0.351 11.4 -0.202 -- 0.651 -- 0.304 -0.101 -- 88.77 141 -- --
52.08 0.338 11.4 -0.108 0.663 -- -0.0803 -- -0.219 6.14 -- -- -- --
52.09 0.338 11.4 -0.109 0.663 -- -- -- -0.219 6.12 -- -- -- --
56.98 0.352 11.4 -0.182 -- 0.689 -- -- -0.089 -- 89.12 145 -- --
46.51 0.318 11.4 -- 0.496 0.459 -- -- -0.11 7.38 88 43 -- --
74.85 0.404 11.5 -0.0906 -- -- -- -- -0.204 -- -- -- -- --
52.41 0.339 11.4 -- 0.661 -- -- -- -0.207 6.12 -- -- -- --
57.8 0.354 11.4 -- -- 0.672 -- -- -0.0719 -- 89.19 141 -- --
75.07 0.404 11.4 -- -- -- -- -- -0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.82 temperature 10.0 10 > th dose dependent rect. 6 21
3 40.95 radiation 1.0 90 < th dose dependent sin 3 NA
4 40.99 temperature 10.0 30 > th dose dependent rect. 6 19
5 41.04 radiation 1.0 90 > th dose independent sin 4 NA
6 41.04 radiation 1.0 90 < th dose independent sin 4 NA
11 41.24 radiation 1.0 90 < th dose independent rect. 3 4
12 41.26 precipitation 0.1 270 < th dose independent rect. 3 22
13 41.26 precipitation 0.1 270 < th dose dependent rect. 3 22
19 41.36 radiation 1.0 90 < th dose independent rect. 3 7
26 41.42 radiation 1.0 90 < th dose dependent rect. 3 7
30 41.45 precipitation 0.1 30 < th dose independent rect. 6 19
31 41.45 radiation 1.0 90 < th dose dependent rect. 3 5
33 41.45 precipitation 0.1 30 < th dose dependent rect. 6 19
34 41.46 precipitation 0.1 30 < th dose independent rect. 6 21
35 41.46 wind 9.0 30 < th dose dependent rect. 6 11
36 41.46 precipitation 0.1 30 < th dose dependent rect. 6 21
47 41.63 humidity 50.0 10 > th dose dependent rect. 17 13
53 41.73 radiation 1.0 90 < th dose independent rect. 1 9
56 41.76 radiation 1.0 90 < th dose independent rect. 1 6
60 41.80 wind 9.0 30 < th dose dependent rect. 6 8
67 41.88 wind 9.0 10 < th dose independent rect. 6 21
71 41.94 humidity 50.0 30 > th dose dependent rect. 1 5
84 42.05 humidity 80.0 30 > th dose independent rect. 1 5
89 42.08 wind 9.0 30 < th dose independent rect. 6 19
92 42.10 radiation 20.0 30 < th dose dependent rect. 3 3
102 42.13 wind 9.0 1440 < th dose independent rect. 2 5
103 42.13 temperature 10.0 1440 > th dose independent rect. 2 5
106 42.13 temperature 30.0 1440 < th dose independent rect. 2 5
110 42.13 humidity 50.0 1440 > th dose independent rect. 2 5
115 42.13 atmosphere 995.0 1440 > th dose independent rect. 2 5
116 42.13 radiation 40.0 1440 < th dose independent rect. 2 5
120 42.13 temperature 10.0 1440 > th dose independent rect. 7 19
124 42.16 humidity 80.0 10 > th dose independent rect. 3 3
132 42.20 wind 9.0 30 < th dose dependent rect. 6 6
134 42.21 wind 9.0 30 < th dose independent rect. 1 5
135 42.21 temperature 10.0 30 > th dose independent rect. 1 5
137 42.21 temperature 30.0 30 < th dose independent rect. 1 5
138 42.21 humidity 50.0 30 > th dose independent rect. 1 5
141 42.21 atmosphere 995.0 30 > th dose independent rect. 1 5
142 42.21 atmosphere 1010.0 30 < th dose independent rect. 1 5
144 42.21 radiation 20.0 30 < th dose independent rect. 1 5
147 42.21 temperature 10.0 30 > th dose independent rect. 6 19
149 42.22 wind 9.0 10 < th dose independent rect. 3 3
150 42.22 temperature 10.0 10 > th dose independent rect. 3 3
152 42.22 temperature 30.0 10 < th dose independent rect. 3 3
153 42.22 humidity 50.0 10 > th dose independent rect. 3 3
156 42.22 atmosphere 995.0 10 > th dose independent rect. 3 3
157 42.22 atmosphere 1010.0 10 < th dose independent rect. 3 3
165 42.22 temperature 10.0 10 > th dose independent rect. 6 21
166 42.22 humidity 50.0 30 > th dose dependent rect. 3 3
183 42.24 radiation 40.0 30 < th dose dependent rect. 1 5
184 42.24 radiation 1.0 90 < th dose dependent rect. 1 9
237 42.45 precipitation 0.1 30 < th dose independent rect. 3 3
238 42.45 precipitation 0.1 30 < th dose dependent rect. 3 3
239 42.46 precipitation 0.1 30 < th dose independent rect. 1 5
241 42.46 precipitation 0.1 30 < th dose dependent rect. 1 5
259 42.55 wind 9.0 10 < th dose dependent rect. 3 3
262 42.58 temperature 10.0 30 > th dose dependent rect. 3 3
278 42.63 wind 9.0 270 < th dose independent rect. 3 22
284 42.66 wind 9.0 30 < th dose dependent rect. 1 5
292 42.70 wind 9.0 30 < th dose dependent rect. 6 19
315 42.74 wind 9.0 30 < th dose dependent rect. 6 21
333 42.79 temperature 10.0 270 > th dose independent rect. 1 2
335 42.79 temperature 30.0 270 < th dose independent rect. 1 2
336 42.79 humidity 50.0 270 > th dose independent rect. 1 2
339 42.79 atmosphere 995.0 270 > th dose independent rect. 1 2
340 42.79 atmosphere 1010.0 270 < th dose independent rect. 1 2
342 42.79 radiation 1.0 270 < th dose independent rect. 1 2
349 42.79 temperature 10.0 270 > th dose independent rect. 3 22
350 42.79 humidity 50.0 270 > th dose dependent rect. 1 2
351 42.79 radiation 1.0 270 < th dose dependent rect. 1 2
356 42.80 wind 9.0 270 < th dose independent rect. 1 2
357 42.80 wind 5.0 30 < th dose independent rect. 6 10
362 42.81 precipitation 0.1 270 < th dose independent rect. 1 2
365 42.81 precipitation 0.1 270 < th dose dependent rect. 1 2
368 42.81 humidity 50.0 10 > th dose dependent rect. 14 16
369 42.82 atmosphere 1015.0 30 < th dose independent rect. 6 19
381 42.87 wind 1.0 30 > th dose independent rect. 6 19
429 42.93 wind 1.0 270 > th dose independent rect. 1 2
470 43.02 temperature 10.0 30 > th dose dependent rect. 1 5
473 43.03 wind 3.0 30 < th dose independent rect. 6 8
498 43.06 atmosphere 995.0 10 > th dose dependent rect. 3 3
531 43.10 wind 7.0 10 < th dose independent rect. 6 6
534 43.12 atmosphere 995.0 30 > th dose independent rect. 6 19
535 43.12 atmosphere 1015.0 30 < th dose independent rect. 6 21
561 43.19 radiation 1.0 90 < th dose dependent rect. 1 18
575 43.24 atmosphere 995.0 10 > th dose independent rect. 6 21
623 43.31 wind 1.0 30 > th dose independent rect. 6 21
639 43.32 atmosphere 1015.0 1440 < th dose independent rect. 4 3
658 43.34 radiation 40.0 10 < th dose dependent rect. 6 21
661 43.37 temperature 10.0 10 > th dose dependent rect. 6 6
687 43.45 wind 9.0 270 < th dose dependent rect. 1 2
689 43.45 radiation 20.0 30 < th dose dependent rect. 16 14
704 43.50 temperature 10.0 270 > th dose dependent rect. 1 2
743 43.61 humidity 50.0 10 > th dose dependent rect. 12 18
744 43.62 atmosphere 1015.0 270 < th dose dependent rect. 1 2
745 43.62 atmosphere 995.0 30 > th dose dependent rect. 1 5
771 43.67 wind 9.0 30 < th dose dependent rect. 16 14
802 43.73 temperature 15.0 10 > th dose independent rect. 12 18
804 43.73 atmosphere 1015.0 90 < th dose dependent rect. 3 2
813 43.74 temperature 30.0 90 < th dose dependent rect. 3 2
823 43.78 radiation 1.0 10 > th dose independent rect. 6 6
824 43.78 precipitation 0.1 10 < th dose independent rect. 6 6
826 43.78 precipitation 0.1 10 < th dose dependent rect. 6 6
836 43.81 temperature 10.0 10 > th dose independent rect. 6 6
838 43.81 atmosphere 995.0 10 > th dose independent rect. 6 6
839 43.81 atmosphere 1015.0 10 < th dose independent rect. 6 6
852 43.83 humidity 90.0 10 < th dose independent rect. 6 6
864 43.87 radiation 40.0 30 < th dose dependent rect. 14 16
912 43.94 radiation 20.0 720 < th dose dependent rect. 17 2
964 43.98 atmosphere 995.0 10 > th dose independent rect. 12 18
966 43.98 atmosphere 1015.0 10 < th dose dependent rect. 2 4
973 44.00 wind 9.0 10 < th dose independent rect. 12 18
985 44.02 temperature 30.0 30 < th dose dependent rect. 1 5
988 44.04 precipitation 0.1 10 < th dose independent rect. 6 8
992 44.04 precipitation 0.1 10 < th dose dependent rect. 6 8
998 44.06 temperature 10.0 1440 > th dose independent rect. 7 6