Os04g0344800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0344800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.56 | 0.35 | 8.83 | -0.325 | 0.487 | -0.616 | -0.406 | -1.18 | -0.391 | 21.6 | 21.4 | 1371 | -- | -- |
| 57.04 | 0.352 | 8.79 | -0.0617 | 0.555 | -0.496 | -0.458 | -- | -0.309 | 21.5 | 21.9 | 852 | -- | -- |
| 55.05 | 0.346 | 8.83 | -0.306 | 0.578 | -0.558 | -- | -0.983 | -0.383 | 21.6 | 21.7 | 864 | -- | -- |
| 57.67 | 0.354 | 8.79 | -0.0526 | 0.573 | -0.498 | -- | -- | -0.32 | 21.6 | 21.9 | 853 | -- | -- |
| 69.89 | 0.389 | 8.81 | -0.345 | -- | -0.533 | -- | -1.05 | -0.393 | -- | 21.99 | 1593 | -- | -- |
| 66.86 | 0.383 | 8.83 | -0.238 | 0.479 | -- | -0.439 | -- | -0.476 | 21.4 | -- | -- | -- | -- |
| 67.56 | 0.385 | 8.83 | -0.223 | 0.479 | -- | -- | -- | -0.475 | 21.5 | -- | -- | -- | -- |
| 71.68 | 0.396 | 8.79 | -0.128 | -- | -0.381 | -- | -- | -0.373 | -- | 21.99 | 1593 | -- | -- |
| 57.71 | 0.354 | 8.79 | -- | 0.577 | -0.517 | -- | -- | -0.311 | 21.6 | 21.87 | 855 | -- | -- |
| 81.06 | 0.421 | 8.81 | -0.22 | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
| 68.86 | 0.388 | 8.82 | -- | 0.479 | -- | -- | -- | -0.451 | 21.4 | -- | -- | -- | -- |
| 71.73 | 0.396 | 8.79 | -- | -- | -0.407 | -- | -- | -0.356 | -- | 21.87 | 855 | -- | -- |
| 82.34 | 0.424 | 8.81 | -- | -- | -- | -- | -- | -0.453 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 3 | 52.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 5 | 53.04 | temperature | 15 | 10 | > th | dose dependent | sin | 4 | NA |
| 12 | 53.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 14 | 53.52 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 15 | 53.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 20 | 53.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 48 | 54.03 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 16 |
| 64 | 54.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 20 |
| 65 | 54.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 73 | 54.25 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 17 |
| 77 | 54.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 85 | 54.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 22 |
| 97 | 54.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 99 | 54.49 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 221 | 55.10 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 222 | 55.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 250 | 55.27 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 23 |
| 255 | 55.28 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 262 | 55.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 18 |
| 277 | 55.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 314 | 55.51 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 14 |
| 319 | 55.53 | temperature | 25 | 90 | > th | dose independent | sin | 5 | NA |
| 357 | 55.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 360 | 55.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 430 | 55.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 473 | 56.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 474 | 56.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 479 | 56.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 496 | 56.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 521 | 56.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 529 | 56.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 541 | 56.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 562 | 56.31 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 617 | 56.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 627 | 56.52 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 19 |
| 658 | 56.60 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 683 | 56.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 742 | 56.82 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 744 | 56.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 753 | 56.85 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 757 | 56.86 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 758 | 56.86 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 834 | 57.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 836 | 57.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 895 | 57.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 897 | 57.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 900 | 57.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 915 | 57.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 936 | 57.20 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 938 | 57.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 940 | 57.20 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 960 | 57.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 967 | 57.22 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 989 | 57.23 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 19 |