Os04g0343900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0343900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.1 | 0.739 | 2.9 | 0.376 | 0.00352 | -0.216 | 0.471 | 2.63 | 0.135 | 12.8 | 74.56 | 4152 | -- | -- |
| 254.04 | 0.742 | 2.9 | 0.0973 | 0.0186 | -0.199 | -0.416 | -- | 0.0576 | 2.06 | 88.18 | 3774 | -- | -- |
| 247.85 | 0.733 | 2.9 | 0.392 | 0.00842 | -0.218 | -- | 2.62 | 0.137 | 14.1 | 74.99 | 4233 | -- | -- |
| 254.48 | 0.743 | 2.9 | 0.103 | 0.0259 | -0.239 | -- | -- | 0.0635 | 23.9 | 88 | 3779 | -- | -- |
| 247.86 | 0.733 | 2.9 | 0.388 | -- | -0.206 | -- | 2.61 | 0.135 | -- | 74.52 | 4233 | -- | -- |
| 254.63 | 0.748 | 2.91 | 0.11 | 0.00963 | -- | -0.366 | -- | -0.00404 | 0.902 | -- | -- | -- | -- |
| 255.17 | 0.748 | 2.91 | 0.124 | 0.0231 | -- | -- | -- | -0.0017 | 20.5 | -- | -- | -- | -- |
| 254.54 | 0.743 | 2.89 | 0.079 | -- | -0.263 | -- | -- | 0.0877 | -- | 88.77 | 3803 | -- | -- |
| 254.6 | 0.743 | 2.89 | -- | 0.0469 | -0.297 | -- | -- | 0.081 | 21.2 | 88 | 3772 | -- | -- |
| 255.2 | 0.746 | 2.91 | 0.124 | -- | -- | -- | -- | -0.00192 | -- | -- | -- | -- | -- |
| 255.57 | 0.748 | 2.91 | -- | 0.0228 | -- | -- | -- | -0.0155 | 20.9 | -- | -- | -- | -- |
| 254.72 | 0.743 | 2.89 | -- | -- | -0.28 | -- | -- | 0.0771 | -- | 88.88 | 3775 | -- | -- |
| 255.6 | 0.746 | 2.91 | -- | -- | -- | -- | -- | -0.0156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 238.43 | radiation | 10 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 3 | 238.60 | radiation | 10 | 10 | < th | dose independent | rect. | 11 | 2 |
| 48 | 243.33 | temperature | 30 | 10 | > th | dose independent | rect. | 18 | 1 |
| 64 | 243.34 | humidity | 70 | 10 | < th | dose independent | rect. | 18 | 1 |
| 98 | 243.67 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 1 |
| 105 | 243.67 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 113 | 243.73 | atmosphere | 995 | 10 | > th | dose independent | sin | 8 | NA |
| 169 | 244.14 | temperature | 30 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 315 | 244.29 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 411 | 244.30 | atmosphere | 995 | 30 | < th | dose independent | sin | 8 | NA |
| 412 | 244.31 | atmosphere | 995 | 30 | < th | dose dependent | sin | 8 | NA |
| 560 | 244.66 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 637 | 245.11 | wind | 5 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 638 | 245.14 | wind | 5 | 270 | > th | dose independent | rect. | 2 | 1 |
| 642 | 245.21 | radiation | 10 | 10 | < th | dose independent | rect. | 5 | 10 |
| 687 | 245.62 | wind | 5 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 718 | 245.78 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 747 | 245.92 | radiation | 10 | 10 | < th | dose independent | rect. | 5 | 21 |
| 749 | 245.93 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 755 | 245.93 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 777 | 246.00 | wind | 5 | 270 | > th | dose independent | rect. | 2 | 3 |
| 785 | 246.10 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 5 | 1 |
| 804 | 246.17 | temperature | 20 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 810 | 246.23 | wind | 7 | 90 | > th | dose independent | rect. | 16 | 1 |
| 817 | 246.32 | temperature | 20 | 90 | < th | dose dependent | rect. | 1 | 1 |
| 819 | 246.33 | humidity | 70 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 833 | 246.36 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 839 | 246.40 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 842 | 246.47 | temperature | 20 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 848 | 246.51 | temperature | 20 | 90 | < th | dose independent | rect. | 24 | 6 |
| 849 | 246.51 | wind | 7 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 873 | 246.59 | humidity | 90 | 4320 | < th | dose dependent | rect. | 12 | 3 |
| 874 | 246.60 | radiation | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 887 | 246.69 | radiation | 10 | 10 | < th | dose independent | rect. | 20 | 19 |
| 914 | 246.77 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 10 |
| 920 | 246.80 | radiation | 10 | 10 | < th | dose independent | rect. | 5 | 12 |
| 929 | 246.86 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 1 |
| 934 | 246.87 | atmosphere | 1010 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 937 | 246.88 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 6 |
| 940 | 246.90 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 1 |
| 950 | 246.91 | radiation | 10 | 10 | < th | dose independent | rect. | 11 | 20 |
| 955 | 246.95 | wind | 1 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 965 | 246.99 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 974 | 247.06 | temperature | 20 | 30 | < th | dose dependent | rect. | 1 | 17 |