Os04g0342600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0342600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.8 | 0.646 | 3.06 | 0.0137 | 0.303 | 1.2 | 0.167 | 1.77 | -0.239 | 3.8 | 19.2 | 3286 | -- | -- |
| 193.38 | 0.648 | 3.12 | 0.00272 | 0.34 | 0.741 | 0.711 | -- | -0.241 | 3.5 | 20.1 | 3251 | -- | -- |
| 188.88 | 0.64 | 3.06 | 0.012 | 0.303 | 1.2 | -- | 1.77 | -0.239 | 3.77 | 19.2 | 3274 | -- | -- |
| 190.36 | 0.643 | 3.13 | -0.0617 | 0.293 | 0.591 | -- | -- | -0.33 | 3.64 | 22.06 | 2996 | -- | -- |
| 193.4 | 0.648 | 3.05 | -0.0167 | -- | 1.26 | -- | 1.85 | -0.242 | -- | 19 | 3993 | -- | -- |
| 200.73 | 0.664 | 3.07 | 0.233 | 0.308 | -- | 0.141 | -- | -0.112 | 3.63 | -- | -- | -- | -- |
| 200.79 | 0.664 | 3.07 | 0.23 | 0.309 | -- | -- | -- | -0.113 | 3.63 | -- | -- | -- | -- |
| 194.33 | 0.649 | 3.13 | -0.0283 | -- | 0.598 | -- | -- | -0.32 | -- | 22 | 2489 | -- | -- |
| 189.91 | 0.642 | 3.11 | -- | 0.3 | 0.568 | -- | -- | -0.299 | 4.16 | 22.04 | 2186 | -- | -- |
| 206.08 | 0.671 | 3.08 | 0.243 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 202.19 | 0.665 | 3.08 | -- | 0.313 | -- | -- | -- | -0.139 | 3.62 | -- | -- | -- | -- |
| 194.31 | 0.649 | 3.12 | -- | -- | 0.588 | -- | -- | -0.307 | -- | 22 | 2564 | -- | -- |
| 207.64 | 0.673 | 3.08 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.09 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 2 | 186.15 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 1 | 7 |
| 6 | 186.62 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 15 | 187.17 | wind | 1 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 20 | 187.20 | wind | 1 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 28 | 187.35 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 20 | 5 |
| 31 | 187.44 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 2 |
| 43 | 187.94 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 55 | 188.23 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 1 | 1 |
| 56 | 188.26 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 1 | 5 |
| 71 | 188.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 75 | 188.57 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 86 | 188.75 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 90 | 188.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 112 | 189.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 120 | 189.35 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 122 | 189.36 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 123 | 189.36 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 129 | 189.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 130 | 189.43 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 135 | 189.45 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 146 | 189.51 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 167 | 189.59 | temperature | 20 | 4320 | < th | dose dependent | sin | 17 | NA |
| 174 | 189.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 177 | 189.61 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 181 | 189.63 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 24 | 3 |
| 194 | 189.67 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 21 | 11 |
| 213 | 189.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 285 | 189.93 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 24 | 11 |
| 290 | 189.94 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 310 | 189.97 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 18 | 8 |
| 327 | 190.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 335 | 190.03 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 336 | 190.03 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 17 | 10 |
| 337 | 190.03 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 356 | 190.08 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 361 | 190.09 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 377 | 190.11 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 383 | 190.12 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 393 | 190.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 422 | 190.16 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 430 | 190.18 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 454 | 190.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 467 | 190.22 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 509 | 190.25 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 528 | 190.27 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 536 | 190.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 550 | 190.28 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 566 | 190.29 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 24 | 13 |
| 585 | 190.30 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 13 | NA |
| 601 | 190.30 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 12 | NA |
| 608 | 190.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 688 | 190.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 713 | 190.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 714 | 190.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 772 | 190.37 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 786 | 190.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 822 | 190.39 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 824 | 190.40 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 12 | NA |
| 882 | 190.42 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 903 | 190.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 916 | 190.44 | wind | 9 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 917 | 190.44 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 925 | 190.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 931 | 190.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 19 |
| 943 | 190.45 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 972 | 190.46 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 3 |