Os04g0342500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0342500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 339.83 | 0.866 | 3.88 | 0.811 | 0.262 | 1.52 | -1.34 | 1.11 | 0.38 | 3.83 | 79.9 | 89 | -- | -- |
| 342.71 | 0.862 | 3.89 | 0.861 | 0.289 | 1.53 | -0.8 | -- | 0.408 | 3.67 | 80.68 | 84 | -- | -- |
| 341.9 | 0.861 | 3.88 | 0.893 | 0.38 | 1.46 | -- | 0.341 | 0.386 | 1.97 | 81 | 104 | -- | -- |
| 342.21 | 0.862 | 3.89 | 0.874 | 0.368 | 1.49 | -- | -- | 0.397 | 1.83 | 81.11 | 106 | -- | -- |
| 344.95 | 0.865 | 3.88 | 0.893 | -- | 1.67 | -- | 0.481 | 0.39 | -- | 77.52 | 86 | -- | -- |
| 402.58 | 0.941 | 3.93 | 1 | 1.39 | -- | 0.181 | -- | 0.179 | 3.07 | -- | -- | -- | -- |
| 402.69 | 0.94 | 3.93 | 0.999 | 1.39 | -- | -- | -- | 0.178 | 3.09 | -- | -- | -- | -- |
| 345.76 | 0.866 | 3.89 | 0.907 | -- | 1.68 | -- | -- | 0.393 | -- | 77.66 | 86 | -- | -- |
| 361.54 | 0.886 | 3.91 | -- | 0.408 | 1.55 | -- | -- | 0.317 | 1.17 | 82 | 134 | -- | -- |
| 512.5 | 1.06 | 3.93 | 1.06 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 429.01 | 0.969 | 3.96 | -- | 1.41 | -- | -- | -- | 0.0664 | 3.09 | -- | -- | -- | -- |
| 366.2 | 0.891 | 3.9 | -- | -- | 1.77 | -- | -- | 0.34 | -- | 80.57 | 103 | -- | -- |
| 542.05 | 1.09 | 3.95 | -- | -- | -- | -- | -- | 0.0964 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 2 | 332.05 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 332.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 4 | 332.98 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 6 | 333.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 7 | 333.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 14 | 335.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 23 | 335.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 24 | 335.65 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 26 | 335.73 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 34 | 336.19 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 64 | 338.03 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 69 | 338.31 | humidity | 80 | 1440 | < th | dose independent | sin | 22 | NA |
| 106 | 339.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 116 | 339.58 | humidity | 80 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 132 | 339.84 | humidity | 80 | 90 | > th | dose dependent | no | NA | NA |
| 135 | 339.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 136 | 339.89 | humidity | 80 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 179 | 340.46 | humidity | 90 | 90 | < th | dose independent | rect. | 7 | 22 |
| 195 | 340.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 229 | 341.52 | humidity | 80 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 240 | 341.74 | humidity | 80 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 254 | 342.13 | humidity | 80 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 268 | 342.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 269 | 342.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 274 | 342.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 291 | 342.56 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 318 | 342.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 325 | 342.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 331 | 343.03 | humidity | 80 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 355 | 343.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 368 | 343.38 | humidity | 80 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 404 | 343.71 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 420 | 343.79 | humidity | 80 | 90 | > th | dose dependent | rect. | 17 | 17 |
| 434 | 343.95 | humidity | 90 | 270 | < th | dose independent | rect. | 13 | 22 |
| 502 | 344.52 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 593 | 345.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 631 | 345.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 650 | 345.50 | humidity | 80 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 787 | 346.34 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 793 | 346.37 | humidity | 90 | 90 | > th | dose independent | rect. | 13 | 21 |
| 807 | 346.46 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 808 | 346.46 | humidity | 70 | 270 | > th | dose dependent | sin | 11 | NA |
| 882 | 347.06 | humidity | 90 | 90 | > th | dose independent | rect. | 23 | 23 |
| 897 | 347.16 | humidity | 90 | 90 | < th | dose independent | rect. | 23 | 23 |
| 954 | 347.51 | humidity | 90 | 90 | < th | dose independent | rect. | 15 | 23 |
| 956 | 347.52 | humidity | 90 | 270 | < th | dose independent | rect. | 3 | 23 |
| 983 | 347.66 | humidity | 90 | 90 | > th | dose independent | rect. | 5 | 23 |