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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0340300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0243) R2 : 0.00775
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0964 (0.0511) R2dN8 : 0.01 R2N8 : 0.00775
σ : 0.457
deviance : 95.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.88 0.448 2.9 -0.186 0.137 0.433 -0.128 1.7 0.0889 10.6 0.5 10 -- --
91.32 0.445 2.9 -0.194 0.132 0.726 -0.189 -- 0.0949 10.8 0.2838 9 -- --
90.94 0.444 2.9 -0.191 0.139 0.433 -- 1.78 0.0884 10.7 0.5 10 -- --
91.44 0.445 2.9 -0.204 0.135 0.715 -- -- 0.093 10.9 0.3 8 -- --
92.11 0.447 2.9 -0.193 -- 0.415 -- 1.64 0.0863 -- 0.5 10 -- --
93.95 0.454 2.9 -0.16 0.118 -- -0.271 -- 0.078 9.99 -- -- -- --
94.22 0.455 2.91 -0.171 0.121 -- -- -- 0.0771 9.54 -- -- -- --
92.56 0.448 2.91 -0.204 -- 0.707 -- -- 0.0912 -- 0.3 9 -- --
92.53 0.448 2.9 -- 0.135 0.712 -- -- 0.115 11 0.3005 9 -- --
95.09 0.456 2.91 -0.172 -- -- -- -- 0.0774 -- -- -- -- --
94.99 0.456 2.9 -- 0.122 -- -- -- 0.0961 9.65 -- -- -- --
93.64 0.451 2.9 -- -- 0.658 -- -- 0.113 -- 0.4999 9 -- --
95.87 0.457 2.9 -- -- -- -- -- 0.0964 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.01 wind 5 90 > th dose dependent rect. 4 6
2 84.29 wind 7 30 > th dose dependent rect. 9 1
4 84.38 wind 7 10 > th dose independent rect. 9 2
41 84.91 wind 7 90 > th dose independent rect. 4 6
148 87.36 humidity 90 90 > th dose independent rect. 8 1
159 87.61 humidity 90 90 > th dose dependent rect. 8 1
192 87.99 wind 7 10 > th dose independent rect. 19 16
196 88.04 radiation 10 90 < th dose dependent rect. 8 1
229 88.54 radiation 10 90 < th dose independent rect. 8 1
242 88.79 humidity 80 30 > th dose independent rect. 11 1
291 89.23 wind 7 10 > th dose independent rect. 16 19
307 89.34 radiation 10 90 < th dose dependent rect. 8 3
316 89.48 wind 5 10 > th dose dependent rect. 19 16
325 89.59 radiation 10 270 < th dose dependent rect. 5 4
344 89.89 radiation 10 270 < th dose independent rect. 5 4
356 90.00 wind 7 10 > th dose independent rect. 13 22
362 90.05 wind 5 10 > th dose dependent rect. 16 19
363 90.05 wind 1 90 > th dose dependent rect. 13 21
366 90.09 radiation 10 270 < th dose independent rect. 3 7
369 90.12 radiation 10 270 < th dose dependent rect. 5 7
372 90.17 humidity 80 90 > th dose independent rect. 6 6
395 90.31 radiation 30 10 < th dose independent rect. 16 18
399 90.32 radiation 20 90 < th dose independent rect. 19 16
410 90.35 humidity 70 10 > th dose dependent rect. 12 1
415 90.38 humidity 70 30 > th dose dependent rect. 10 2
419 90.39 wind 5 90 > th dose independent rect. 13 21
424 90.40 temperature 20 270 > th dose independent rect. 5 2
426 90.40 radiation 20 270 < th dose dependent rect. 3 7
428 90.41 radiation 30 10 < th dose independent rect. 3 7
438 90.44 wind 1 90 > th dose dependent rect. 15 19
465 90.55 wind 1 90 > th dose independent rect. 11 23
474 90.57 humidity 80 90 > th dose independent rect. 2 8
476 90.57 radiation 20 10 < th dose independent rect. 16 20
514 90.64 radiation 10 30 > th dose dependent rect. 16 15
516 90.65 radiation 10 270 < th dose independent rect. 15 18
526 90.66 humidity 60 90 > th dose dependent rect. 19 17
559 90.71 radiation 40 10 < th dose dependent rect. 16 18
562 90.72 wind 1 90 > th dose independent rect. 13 22
572 90.74 humidity 80 90 < th dose independent sin 3 NA
577 90.74 humidity 60 90 > th dose dependent rect. 2 8
590 90.76 radiation 10 270 < th dose dependent sin 3 NA
595 90.77 radiation 10 270 < th dose independent sin 5 NA
597 90.77 humidity 80 90 > th dose independent rect. 19 17
598 90.77 radiation 10 270 > th dose independent rect. 17 19
599 90.77 wind 1 270 > th dose dependent rect. 5 2
617 90.79 radiation 10 30 > th dose independent rect. 16 15
624 90.80 radiation 1 270 > th dose dependent rect. 17 19
626 90.81 radiation 10 270 > th dose independent rect. 6 6
628 90.81 humidity 70 10 > th dose independent rect. 3 8
652 90.82 humidity 80 90 > th dose independent sin 3 NA
675 90.84 humidity 80 90 < th dose independent rect. 5 10
681 90.84 radiation 1 270 > th dose dependent rect. 5 7
693 90.84 humidity 50 10 > th dose dependent rect. 16 18
702 90.85 radiation 20 10 < th dose independent rect. 6 15
703 90.85 radiation 30 10 < th dose independent rect. 19 15
729 90.87 radiation 30 10 < th dose dependent rect. 6 4
742 90.89 humidity 90 270 > th dose independent rect. 24 9
754 90.89 radiation 10 270 < th dose dependent rect. 15 18
760 90.90 humidity 80 90 < th dose independent rect. 17 22
771 90.91 atmosphere 1015 30 < th dose dependent rect. 3 7
776 90.91 humidity 80 10 < th dose dependent rect. 17 23
783 90.92 radiation 20 30 < th dose independent rect. 6 11
789 90.92 radiation 40 10 < th dose dependent rect. 14 20
801 90.94 radiation 20 10 < th dose independent rect. 6 6
812 90.94 radiation 40 90 < th dose dependent rect. 19 15
824 90.96 radiation 10 90 > th dose independent rect. 10 1
825 90.96 radiation 30 10 < th dose independent rect. 6 4
828 90.96 humidity 70 90 > th dose dependent rect. 5 5
841 90.97 humidity 70 10 > th dose independent rect. 6 11
843 90.97 humidity 70 10 > th dose independent rect. 19 22
871 90.99 temperature 25 270 < th dose independent rect. 24 9
888 91.00 radiation 20 10 < th dose dependent rect. 6 6
889 91.00 wind 9 10 < th dose dependent rect. 10 17
894 91.01 humidity 70 10 > th dose independent rect. 16 20
918 91.02 humidity 70 10 > th dose dependent rect. 6 5
931 91.02 radiation 10 270 < th dose dependent rect. 5 12
942 91.03 humidity 80 90 > th dose independent rect. 22 14
945 91.03 wind 7 10 > th dose independent rect. 16 23
955 91.04 wind 1 90 > th dose independent rect. 15 19
959 91.04 humidity 50 270 > th dose dependent sin 6 NA
960 91.04 radiation 1 270 > th dose dependent sin 9 NA
972 91.05 humidity 80 30 < th dose dependent sin 5 NA
987 91.06 radiation 20 30 < th dose independent rect. 19 22
997 91.06 wind 9 90 < th dose dependent rect. 21 16