Os04g0339800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to YDA.
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Os04g0339800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to YDA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 380.95 | 0.917 | 4.98 | 3.25 | 0.857 | -2.11 | 1.26 | 2.48 | 1.49 | 1.88 | 24.1 | 1217 | -- | -- |
| 383.58 | 0.912 | 5.07 | 2.6 | 0.855 | -1.87 | 1.46 | -- | 1.3 | 1.76 | 24.26 | 1195 | -- | -- |
| 386.37 | 0.915 | 4.96 | 3.39 | 0.907 | -2.25 | -- | 3.36 | 1.53 | 1.36 | 23.95 | 1130 | -- | -- |
| 391.5 | 0.922 | 5.07 | 2.54 | 0.855 | -1.87 | -- | -- | 1.3 | 1.76 | 24 | 1194 | -- | -- |
| 412.12 | 0.946 | 4.96 | 3.47 | -- | -2.03 | -- | 3.11 | 1.54 | -- | 24.29 | 1595 | -- | -- |
| 500.1 | 1.05 | 5.12 | 1.99 | 0.499 | -- | 1.11 | -- | 1.03 | 2.31 | -- | -- | -- | -- |
| 504.65 | 1.05 | 5.13 | 1.96 | 0.5 | -- | -- | -- | 1.02 | 2.26 | -- | -- | -- | -- |
| 412.29 | 0.946 | 5.03 | 2.6 | -- | -1.75 | -- | -- | 1.4 | -- | 23 | 1622 | -- | -- |
| 547.25 | 1.09 | 5.16 | -- | 0.79 | -1.29 | -- | -- | 0.873 | 1.65 | 25.3 | 1131 | -- | -- |
| 519.54 | 1.07 | 5.12 | 1.98 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 605.82 | 1.15 | 5.17 | -- | 0.538 | -- | -- | -- | 0.8 | 2.33 | -- | -- | -- | -- |
| 569.42 | 1.12 | 5.13 | -- | -- | -1.44 | -- | -- | 0.982 | -- | 23 | 1622 | -- | -- |
| 622.98 | 1.17 | 5.17 | -- | -- | -- | -- | -- | 0.811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 353.79 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 2 | 354.15 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 3 | 357.39 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 6 | 362.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 12 | 365.44 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 31 | 369.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 42 | 370.57 | wind | 7.0 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 43 | 370.68 | wind | 7.0 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 46 | 371.02 | wind | 7.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 47 | 371.10 | wind | 7.0 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 48 | 371.15 | wind | 7.0 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 49 | 371.17 | wind | 7.0 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 50 | 371.19 | wind | 7.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 65 | 371.74 | wind | 7.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 78 | 372.19 | wind | 7.0 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 91 | 372.37 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 92 | 372.37 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 103 | 372.58 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 130 | 373.74 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 151 | 374.45 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 198 | 375.62 | wind | 7.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 276 | 377.80 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 311 | 378.51 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 387 | 380.01 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 511 | 382.30 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 524 | 382.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 549 | 382.80 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 551 | 382.81 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 567 | 382.95 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 569 | 382.96 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 577 | 383.08 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 634 | 383.49 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 671 | 383.69 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 681 | 383.76 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 789 | 384.28 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 799 | 384.32 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 801 | 384.34 | temperature | 25.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 956 | 385.05 | wind | 7.0 | 43200 | > th | dose independent | no | NA | NA |
| 961 | 385.06 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 980 | 385.17 | wind | 7.0 | 43200 | < th | dose independent | no | NA | NA |
| 990 | 385.21 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |