Os04g0331900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0331900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.32 | 0.493 | 4.52 | -0.0704 | 0.583 | -1.09 | 0.525 | -1.44 | -1.66 | 3.22 | 24.95 | 2425 | -- | -- |
| 112.92 | 0.495 | 4.56 | -0.386 | 0.58 | -0.967 | 0.677 | -- | -1.73 | 3.08 | 25.49 | 2515 | -- | -- |
| 111.17 | 0.491 | 4.52 | -0.0554 | 0.587 | -1.1 | -- | -1.56 | -1.66 | 3.31 | 24.81 | 2426 | -- | -- |
| 114.35 | 0.498 | 4.57 | -0.393 | 0.583 | -0.955 | -- | -- | -1.74 | 3.27 | 25.8 | 2510 | -- | -- |
| 129.78 | 0.531 | 4.52 | -0.0663 | -- | -1.25 | -- | -1.65 | -1.68 | -- | 25.6 | 2515 | -- | -- |
| 129.12 | 0.533 | 4.51 | 0.0136 | 0.66 | -- | 0.622 | -- | -1.49 | 2.87 | -- | -- | -- | -- |
| 130.42 | 0.535 | 4.51 | -0.000861 | 0.664 | -- | -- | -- | -1.49 | 2.99 | -- | -- | -- | -- |
| 133.1 | 0.537 | 4.57 | -0.431 | -- | -1.1 | -- | -- | -1.76 | -- | 26.3 | 2537 | -- | -- |
| 117.52 | 0.505 | 4.55 | -- | 0.593 | -0.759 | -- | -- | -1.65 | 3.23 | 26 | 2430 | -- | -- |
| 155.75 | 0.583 | 4.51 | 0.0275 | -- | -- | -- | -- | -1.47 | -- | -- | -- | -- | -- |
| 130.42 | 0.534 | 4.51 | -- | 0.664 | -- | -- | -- | -1.49 | 2.99 | -- | -- | -- | -- |
| 136.98 | 0.545 | 4.55 | -- | -- | -0.893 | -- | -- | -1.67 | -- | 26.5 | 2514 | -- | -- |
| 155.77 | 0.583 | 4.51 | -- | -- | -- | -- | -- | -1.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.78 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 112.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 4 | 112.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 6 | 112.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 8 | 112.54 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 9 | 112.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 13 | 112.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 14 | 112.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 8 |
| 36 | 112.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 47 | 112.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 3 | NA |
| 51 | 112.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 14 |
| 53 | 112.77 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 54 | 112.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 83 | 112.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 91 | 112.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 97 | 112.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 103 | 112.87 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 106 | 112.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 112 | 112.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 142 | 112.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 21 |
| 167 | 112.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 180 | 112.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 183 | 112.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 217 | 113.00 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 234 | 113.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 237 | 113.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 341 | 113.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 415 | 113.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 463 | 113.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 483 | 113.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 538 | 113.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 568 | 113.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 576 | 113.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 21 |
| 594 | 113.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 608 | 113.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 637 | 113.56 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 691 | 113.59 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 704 | 113.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 735 | 113.63 | temperature | 25 | 1440 | < th | dose independent | sin | 4 | NA |
| 736 | 113.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 740 | 113.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 21 |
| 745 | 113.63 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 750 | 113.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 771 | 113.66 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 814 | 113.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 834 | 113.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 861 | 113.72 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 866 | 113.73 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |