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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0329800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.93 (0.0457) R2 : 0.775
β1 : 0.546 (0.177) R2dD : 0.00539 R2D : -0.141
β2 : 3.16 (0.135) R2dC : 0.389 R2C : 0.181
β3 : 0.587 (0.14) R2dE : 0.0131 R2E : -0.295
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.9 (0.697) R2dD*E : 0.0483 R2D*E : -0.166
γ1 : -2.79 (0.105) R2dN8 : 0.594 R2N8 : 0.389
σ : 0.82
deviance : 310.32
__
_____
C
peak time of C : 19.6
E
wheather : temperature
threshold : 24.6
memory length : 19
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.03
open length of G : 6.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
309.11 0.826 5.91 0.54 3.13 0.554 0.92 -5.97 -2.79 19.6 24.9 12 4.02 6.95
348.78 0.87 5.92 1.1 3.17 0.567 1.73 -- -2.67 19.7 24.94 24 3.75 7.25
310.32 0.82 5.93 0.546 3.16 0.587 -- -5.9 -2.79 19.6 24.6 19 4.03 6.93
360.63 0.884 5.88 1.15 3.11 0.595 -- -- -2.61 19.7 25.02 22 3.88 7.72
500.79 1.04 5.82 0.776 -- -1.87 -- -4.94 -2.39 -- 22.3 27 4.12 7.69
356.92 0.886 5.83 1.23 2.82 -- 2.28 -- -2.43 19.7 -- -- -- --
371.6 0.903 5.83 1.17 2.83 -- -- -- -2.43 19.6 -- -- -- --
419.16 0.954 5.71 1.3 -- -2.02 -- -- -2.4 -- 16.4 100 2.77 8.98
394.33 0.925 5.91 -- 3.12 0.617 -- -- -2.75 19.7 25.08 22 3.85 7.64
801.47 1.32 5.76 1.13 -- -- -- -- -2.47 -- -- -- -- --
407.8 0.945 5.86 -- 2.82 -- -- -- -2.56 19.7 -- -- -- --
448.35 0.986 5.79 -- -- -2.03 -- -- -2.63 -- 10.88 125 2.35 9.27
835.31 1.35 5.79 -- -- -- -- -- -2.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.34 temperature 25.0 10 > th dose independent rect. 4 7
2 310.61 temperature 25.0 10 > th dose independent rect. 1 10
13 314.87 atmosphere 1005.0 30 > th dose dependent rect. 14 9
14 315.33 temperature 30.0 720 > th dose independent rect. 13 1
25 318.81 humidity 90.0 10 < th dose independent rect. 4 3
26 318.81 humidity 90.0 10 < th dose independent rect. 2 5
30 319.28 temperature 30.0 720 > th dose independent rect. 11 3
51 322.67 temperature 25.0 270 > th dose independent rect. 2 6
57 323.40 temperature 20.0 270 > th dose dependent rect. 6 1
60 323.81 atmosphere 1005.0 90 < th dose independent rect. 12 7
81 324.55 atmosphere 1005.0 270 > th dose dependent rect. 2 3
82 324.61 temperature 20.0 270 > th dose dependent rect. 3 5
90 324.86 temperature 30.0 30 < th dose independent rect. 7 23
94 324.99 atmosphere 1010.0 10 < th dose dependent rect. 12 8
96 325.13 temperature 20.0 270 > th dose dependent rect. 4 3
97 325.17 temperature 15.0 30 > th dose independent rect. 7 23
99 325.27 atmosphere 1005.0 90 < th dose independent rect. 12 9
106 325.56 atmosphere 1005.0 270 > th dose dependent rect. 23 7
110 325.69 atmosphere 1005.0 30 > th dose dependent rect. 16 7
114 325.79 humidity 90.0 10 < th dose dependent rect. 4 3
118 325.88 humidity 90.0 10 < th dose dependent rect. 6 1
119 325.88 atmosphere 1005.0 270 > th dose dependent rect. 1 5
121 325.92 temperature 25.0 270 > th dose independent rect. 6 1
133 326.43 wind 1.0 10 > th dose dependent rect. 6 1
134 326.43 radiation 10.0 30 < th dose dependent rect. 6 1
171 327.29 atmosphere 1005.0 30 > th dose dependent rect. 1 8
197 328.00 radiation 1.0 10 > th dose dependent rect. 6 1
202 328.12 atmosphere 1015.0 30 < th dose dependent rect. 6 1
204 328.15 wind 1.0 10 > th dose independent rect. 6 1
214 328.53 atmosphere 1005.0 10 > th dose independent rect. 6 1
215 328.55 temperature 25.0 30 > th dose independent rect. 6 1
216 328.55 radiation 10.0 30 < th dose independent rect. 6 1
220 328.65 temperature 20.0 30 > th dose dependent rect. 6 1
231 328.96 radiation 1.0 10 > th dose independent rect. 6 1
234 329.01 atmosphere 1010.0 30 < th dose independent rect. 6 1
237 329.10 atmosphere 995.0 4320 > th dose independent rect. 7 1
239 329.14 temperature 25.0 10 > th dose dependent rect. 3 4
245 329.20 temperature 15.0 4320 > th dose independent rect. 7 1
256 329.41 atmosphere 1005.0 30 > th dose independent rect. 14 9
261 329.50 wind 5.0 10 < th dose independent rect. 6 1
264 329.50 temperature 10.0 10 > th dose independent rect. 6 1
266 329.50 temperature 30.0 10 < th dose independent rect. 6 1
267 329.50 humidity 50.0 10 > th dose independent rect. 6 1
275 329.50 precipitation 0.1 10 < th dose independent rect. 6 1
277 329.50 precipitation 0.1 10 < th dose dependent rect. 6 1
292 329.68 humidity 50.0 30 > th dose independent rect. 7 23
299 329.73 atmosphere 995.0 30 > th dose independent rect. 7 23
324 329.95 wind 3.0 720 < th dose independent rect. 12 1
326 329.97 wind 9.0 1440 < th dose independent rect. 7 1
331 329.97 temperature 30.0 1440 < th dose independent rect. 7 1
335 329.97 humidity 50.0 1440 > th dose independent rect. 7 1
341 329.97 atmosphere 1015.0 1440 < th dose independent rect. 7 1
343 329.97 temperature 10.0 1440 > th dose independent rect. 8 23
357 330.14 atmosphere 995.0 10 > th dose dependent rect. 6 1
378 330.42 humidity 50.0 30 > th dose dependent rect. 6 1
389 330.58 wind 9.0 10 < th dose dependent rect. 6 1
398 330.72 temperature 20.0 720 > th dose dependent rect. 23 6
426 331.09 temperature 20.0 720 > th dose dependent rect. 2 1
437 331.26 wind 5.0 720 < th dose dependent rect. 12 1
441 331.30 precipitation 0.1 30 < th dose independent rect. 7 23
442 331.30 precipitation 0.1 30 < th dose dependent rect. 7 23
460 331.48 wind 9.0 30 < th dose independent rect. 7 23
467 331.59 wind 3.0 720 < th dose independent rect. 11 3
471 331.61 temperature 30.0 10 < th dose dependent rect. 6 1
519 332.24 wind 1.0 30 > th dose independent rect. 12 19
548 332.70 temperature 30.0 270 < th dose independent rect. 14 22
599 333.26 temperature 30.0 270 < th dose independent rect. 7 14
605 333.39 radiation 20.0 10 < th dose independent rect. 23 10
615 333.45 humidity 90.0 720 > th dose independent rect. 1 1
616 333.45 temperature 30.0 90 < th dose independent rect. 7 16
619 333.49 wind 1.0 90 > th dose independent rect. 23 8
625 333.59 atmosphere 1015.0 30 < th dose independent rect. 7 23
653 333.93 temperature 25.0 10 > th dose dependent rect. 12 19
666 334.04 atmosphere 1005.0 30 > th dose dependent rect. 9 14
671 334.10 temperature 25.0 10 > th dose independent sin 6 NA
672 334.12 temperature 25.0 1440 < th dose independent rect. 4 2
705 334.46 radiation 40.0 1440 < th dose independent rect. 7 1
741 334.63 temperature 25.0 10 > th dose dependent rect. 12 8
743 334.66 temperature 15.0 1440 > th dose independent rect. 8 5
744 334.67 atmosphere 1005.0 30 > th dose independent rect. 9 14
780 334.92 temperature 25.0 10 > th dose dependent rect. 10 21
789 334.97 wind 1.0 30 > th dose dependent rect. 4 3
809 335.17 temperature 30.0 720 > th dose independent sin 7 NA
811 335.18 temperature 15.0 10 > th dose independent rect. 20 16
815 335.22 temperature 25.0 10 < th dose independent rect. 4 6
817 335.24 temperature 25.0 720 > th dose dependent rect. 8 9
824 335.29 temperature 25.0 720 > th dose dependent rect. 10 5
834 335.38 wind 1.0 270 > th dose independent rect. 21 10
845 335.47 radiation 1.0 30 > th dose dependent rect. 17 14
868 335.67 temperature 25.0 90 > th dose dependent rect. 11 9
888 335.79 atmosphere 1005.0 90 < th dose independent rect. 12 16
897 335.83 temperature 30.0 720 < th dose independent rect. 7 5
901 335.85 atmosphere 1010.0 30 < th dose dependent rect. 15 5
904 335.87 temperature 25.0 10 > th dose dependent rect. 10 23
908 335.90 temperature 25.0 720 > th dose independent rect. 21 10
915 335.98 wind 5.0 270 < th dose independent rect. 11 6
919 336.05 wind 5.0 10 < th dose independent rect. 12 6
921 336.05 atmosphere 1005.0 30 > th dose dependent rect. 18 5
940 336.19 humidity 90.0 4320 < th dose dependent rect. 2 2
950 336.24 humidity 80.0 720 > th dose independent rect. 21 10
953 336.26 wind 1.0 270 < th dose independent rect. 4 6
990 336.33 humidity 60.0 90 > th dose independent rect. 7 16