Os04g0324000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0324000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.02 | 0.472 | 7.99 | 1.83 | 0.72 | 1.19 | 0.196 | -0.702 | 0.0787 | 2.18 | 6.233 | 1448 | -- | -- |
| 101.79 | 0.47 | 8 | 1.81 | 0.696 | 1.2 | 0.198 | -- | 0.0726 | 2.24 | 6.24 | 1459 | -- | -- |
| 101.15 | 0.468 | 7.99 | 1.83 | 0.719 | 1.19 | -- | -0.698 | 0.0789 | 2.24 | 6.23 | 1449 | -- | -- |
| 101.89 | 0.47 | 7.99 | 1.78 | 0.691 | 1.21 | -- | -- | 0.0763 | 2.31 | 6.233 | 1463 | -- | -- |
| 104.11 | 0.475 | 8 | 1.86 | -- | 1.63 | -- | -0.568 | 0.0796 | -- | 5 | 1709 | -- | -- |
| 138.44 | 0.552 | 8.04 | 1.85 | 0.725 | -- | -0.0814 | -- | -0.128 | 2.06 | -- | -- | -- | -- |
| 138.47 | 0.551 | 8.04 | 1.85 | 0.725 | -- | -- | -- | -0.128 | 2.04 | -- | -- | -- | -- |
| 104.27 | 0.476 | 7.99 | 1.83 | -- | 1.62 | -- | -- | 0.0756 | -- | 5.01 | 1710 | -- | -- |
| 172.52 | 0.612 | 8.03 | -- | 0.564 | 1.93 | -- | -- | -0.079 | 2.59 | 9.895 | 4518 | -- | -- |
| 170.04 | 0.609 | 8.03 | 1.88 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 229.12 | 0.708 | 8.08 | -- | 0.76 | -- | -- | -- | -0.335 | 2.1 | -- | -- | -- | -- |
| 181.3 | 0.627 | 8.01 | -- | -- | 1.96 | -- | -- | -0.0823 | -- | 8.742 | 1737 | -- | -- |
| 263.75 | 0.758 | 8.08 | -- | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.83 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 3 | 98.10 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 5 | 98.48 | radiation | 20 | 1440 | < th | dose dependent | sin | 12 | NA |
| 17 | 99.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 19 | 99.32 | radiation | 1 | 1440 | > th | dose dependent | sin | 12 | NA |
| 31 | 99.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 36 | 99.91 | radiation | 10 | 1440 | > th | dose independent | sin | 11 | NA |
| 43 | 100.03 | radiation | 10 | 1440 | < th | dose independent | sin | 13 | NA |
| 49 | 100.07 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 57 | 100.17 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 114 | 101.16 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 220 | 102.31 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 225 | 102.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 226 | 102.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 227 | 102.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 229 | 102.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 230 | 102.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 232 | 102.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 247 | 102.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 255 | 102.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 256 | 102.35 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 259 | 102.36 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 500 | 103.14 | radiation | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 518 | 103.21 | radiation | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 524 | 103.23 | radiation | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 530 | 103.25 | radiation | 20 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 538 | 103.27 | radiation | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 540 | 103.29 | radiation | 40 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 549 | 103.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 560 | 103.33 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 684 | 103.63 | radiation | 10 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 706 | 103.71 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 738 | 103.79 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 754 | 103.83 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 761 | 103.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 764 | 103.84 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 778 | 103.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 779 | 103.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 789 | 103.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 825 | 103.88 | radiation | 10 | 1440 | < th | dose independent | no | NA | NA |