Os04g0323500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0323500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.83 | 0.443 | 7.71 | 0.76 | 1.42 | -0.626 | 0.165 | -1.68 | -0.291 | 19.2 | 5.9 | 247 | -- | -- |
| 102.44 | 0.471 | 7.71 | 0.742 | 1.39 | -0.775 | -0.361 | -- | -0.284 | 19.7 | 5.551 | 251 | -- | -- |
| 88.9 | 0.439 | 7.71 | 0.757 | 1.42 | -0.621 | -- | -1.67 | -0.291 | 19.2 | 5.904 | 246 | -- | -- |
| 102.56 | 0.472 | 7.7 | 0.787 | 1.42 | -0.668 | -- | -- | -0.284 | 19.3 | 5.55 | 249 | -- | -- |
| 118.27 | 0.507 | 7.69 | 1.18 | -- | -1.66 | -- | -2.19 | -0.345 | -- | 2.143 | 667 | -- | -- |
| 105.67 | 0.482 | 7.7 | 0.787 | 1.69 | -- | 1.01 | -- | -0.276 | 17.5 | -- | -- | -- | -- |
| 108.05 | 0.487 | 7.7 | 0.782 | 1.7 | -- | -- | -- | -0.273 | 17.6 | -- | -- | -- | -- |
| 112.25 | 0.493 | 7.67 | 0.608 | -- | -1.95 | -- | -- | -0.343 | -- | 0.08002 | 685 | -- | -- |
| 115.26 | 0.5 | 7.73 | -- | 1.42 | -0.663 | -- | -- | -0.408 | 19 | 10.4 | 230 | -- | -- |
| 258.05 | 0.751 | 7.67 | 0.727 | -- | -- | -- | -- | -0.313 | -- | -- | -- | -- | -- |
| 124.17 | 0.521 | 7.72 | -- | 1.69 | -- | -- | -- | -0.36 | 17.6 | -- | -- | -- | -- |
| 120.94 | 0.512 | 7.68 | -- | -- | -1.98 | -- | -- | -0.417 | -- | 0.009961 | 685 | -- | -- |
| 272.01 | 0.77 | 7.69 | -- | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 9 | 80.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 28 | 82.34 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 30 | 82.45 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 18 |
| 31 | 82.47 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 33 | 82.56 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 85 | 83.86 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 93 | 84.06 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 96 | 84.09 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 9 |
| 108 | 84.22 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 141 | 84.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 3 |
| 160 | 85.14 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 201 | 85.40 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 232 | 85.62 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 240 | 85.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 13 |
| 245 | 85.74 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 262 | 85.87 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 266 | 85.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 267 | 85.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 271 | 85.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 300 | 86.18 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 304 | 86.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 310 | 86.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 313 | 86.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 315 | 86.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 319 | 86.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 327 | 86.33 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 390 | 86.72 | temperature | 10.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 523 | 87.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 524 | 87.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 554 | 87.49 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 623 | 87.80 | temperature | 25.0 | 270 | > th | dose independent | sin | 3 | NA |
| 644 | 87.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 10 |
| 645 | 87.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 662 | 87.93 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 6 | 3 |
| 708 | 88.10 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 740 | 88.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 757 | 88.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 790 | 88.32 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 804 | 88.37 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 809 | 88.39 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 858 | 88.48 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 879 | 88.56 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 881 | 88.57 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 10 |
| 890 | 88.59 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 995 | 88.84 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 11 |