Os04g0321700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C).
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Os04g0321700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine carboxypeptidase I precursor (EC 3.4.16.5) (Carboxypeptidase C).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.76 | 0.289 | 11.6 | 0.967 | 0.753 | -0.518 | -0.877 | 1.07 | 0.527 | 20.6 | 19.85 | 1608 | -- | -- |
| 37.67 | 0.286 | 11.6 | 0.868 | 0.778 | -0.761 | -0.956 | -- | 0.528 | 20.7 | 19.05 | 2720 | -- | -- |
| 39.13 | 0.291 | 11.6 | 1.09 | 0.752 | -0.516 | -- | 1.18 | 0.537 | 20.8 | 19.1 | 2817 | -- | -- |
| 40.32 | 0.296 | 11.6 | 0.96 | 0.749 | -0.797 | -- | -- | 0.522 | 20.8 | 19.01 | 2827 | -- | -- |
| 71.34 | 0.393 | 11.6 | 1.11 | -- | -0.607 | -- | 1.06 | 0.553 | -- | 19.2 | 2937 | -- | -- |
| 48.16 | 0.325 | 11.7 | 0.528 | 0.762 | -- | -0.984 | -- | 0.358 | 20.5 | -- | -- | -- | -- |
| 51.21 | 0.335 | 11.7 | 0.558 | 0.762 | -- | -- | -- | 0.357 | 20.7 | -- | -- | -- | -- |
| 72.04 | 0.395 | 11.6 | 1.01 | -- | -0.9 | -- | -- | 0.507 | -- | 18.4 | 2908 | -- | -- |
| 56.8 | 0.353 | 11.7 | -- | 0.743 | -0.259 | -- | -- | 0.332 | 20.5 | 19.89 | 1480 | -- | -- |
| 84.03 | 0.428 | 11.6 | 0.556 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 59.42 | 0.361 | 11.7 | -- | 0.761 | -- | -- | -- | 0.295 | 20.7 | -- | -- | -- | -- |
| 82.49 | 0.423 | 11.7 | -- | -- | 0.443 | -- | -- | 0.175 | -- | 25.92 | 673 | -- | -- |
| 92.19 | 0.448 | 11.7 | -- | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 2 | 36.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 4 | 36.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 9 | 36.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 14 | 36.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 26 | 36.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 33 | 36.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 34 | 36.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 36 | 36.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 75 | 36.44 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 81 | 36.45 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 159 | 36.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 180 | 36.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 403 | 37.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 467 | 37.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 567 | 37.95 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 573 | 37.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 580 | 38.00 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 596 | 38.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 606 | 38.08 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 609 | 38.11 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 618 | 38.14 | radiation | 40 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 649 | 38.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 661 | 38.27 | radiation | 40 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 670 | 38.29 | radiation | 40 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 680 | 38.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 736 | 38.45 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 743 | 38.47 | radiation | 30 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 756 | 38.51 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 773 | 38.52 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 831 | 38.65 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 18 |
| 855 | 38.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 899 | 38.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 911 | 38.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 923 | 38.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 3 |