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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0319700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucosyltransferase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.52 (0.0344) R2 : 0.00487
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.108 (0.0723) R2dN8 : 0.00629 R2N8 : 0.00487
σ : 0.647
deviance : 192.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.34 0.6 3.46 0.0356 0.3 -0.609 -1.56 0.601 0.0608 6.87 20.8 3740 -- --
164.03 0.596 3.49 -0.0937 0.289 -0.647 -1.58 -- 0.0248 6.95 21 3753 -- --
169.6 0.607 3.46 0.0144 0.297 -0.593 -- 0.674 0.0662 6.68 20.8 3692 -- --
170.31 0.608 3.48 -0.105 0.291 -0.698 -- -- 0.0355 6.59 20.7 3740 -- --
174.13 0.615 3.46 0.0274 -- -0.587 -- 0.693 0.0691 -- 20.7 3675 -- --
174.12 0.619 3.53 -0.497 0.303 -- -1.52 -- -0.175 7.11 -- -- -- --
180.18 0.629 3.53 -0.527 0.3 -- -- -- -0.171 7.11 -- -- -- --
174.8 0.616 3.49 -0.114 -- -0.682 -- -- 0.0418 -- 20.7 3684 -- --
170.59 0.608 3.48 -- 0.296 -0.734 -- -- 0.0573 6.6 20.8 3754 -- --
184.93 0.635 3.54 -0.521 -- -- -- -- -0.166 -- -- -- -- --
187.5 0.641 3.52 -- 0.295 -- -- -- -0.113 7.22 -- -- -- --
175 0.616 3.48 -- -- -0.753 -- -- 0.0633 -- 20.69 3684 -- --
192.1 0.647 3.52 -- -- -- -- -- -0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.02 humidity 90 720 < th dose dependent rect. 3 3
3 159.22 humidity 90 720 < th dose dependent rect. 5 1
6 159.71 radiation 10 1440 < th dose independent rect. 17 13
7 159.76 humidity 90 720 < th dose independent rect. 3 1
8 160.05 humidity 90 720 < th dose independent rect. 2 4
9 160.16 atmosphere 1005 30 > th dose dependent rect. 2 6
10 160.19 humidity 90 720 > th dose independent rect. 3 1
18 160.75 temperature 20 720 > th dose dependent rect. 21 12
21 160.83 temperature 20 270 < th dose dependent rect. 4 3
24 161.07 radiation 1 270 > th dose dependent rect. 4 2
41 161.30 radiation 10 1440 < th dose independent rect. 17 5
43 161.35 radiation 10 1440 < th dose independent rect. 17 7
45 161.37 radiation 10 1440 < th dose independent rect. 17 2
53 161.48 temperature 20 720 < th dose independent rect. 3 2
56 161.52 temperature 20 270 < th dose dependent rect. 5 1
61 161.68 temperature 20 720 < th dose independent rect. 22 8
73 161.93 temperature 20 720 > th dose independent rect. 21 9
76 161.97 atmosphere 1005 10 > th dose dependent rect. 2 8
108 162.44 radiation 40 1440 < th dose independent rect. 15 13
114 162.63 radiation 1 270 > th dose independent rect. 4 1
139 162.69 humidity 50 43200 > th dose independent rect. 19 1
144 162.71 temperature 20 720 > th dose dependent sin 9 NA
149 162.81 temperature 20 720 > th dose independent rect. 23 2
150 162.81 radiation 40 1440 < th dose independent rect. 15 10
151 162.81 temperature 20 720 > th dose independent rect. 21 12
154 162.83 radiation 1 14400 > th dose independent rect. 11 1
155 162.83 radiation 40 1440 < th dose independent rect. 15 7
161 162.87 radiation 40 1440 < th dose independent rect. 15 2
170 162.91 radiation 40 1440 < th dose independent rect. 15 4
180 162.97 temperature 20 720 > th dose independent rect. 3 1
181 162.98 humidity 90 43200 > th dose independent rect. 13 1
184 162.98 radiation 40 1440 < th dose independent rect. 15 16
190 163.01 wind 3 14400 < th dose independent rect. 11 1
200 163.08 temperature 20 270 > th dose dependent sin 6 NA
201 163.08 humidity 90 43200 > th dose dependent rect. 13 3
202 163.09 wind 3 14400 > th dose independent rect. 11 1
203 163.09 radiation 1 14400 < th dose independent rect. 11 1
204 163.09 radiation 1 14400 < th dose dependent rect. 11 1
208 163.11 temperature 20 720 > th dose dependent rect. 3 1
212 163.14 temperature 10 720 > th dose dependent rect. 21 8
241 163.32 humidity 90 10 < th dose dependent rect. 3 5
245 163.34 radiation 10 4320 > th dose dependent rect. 17 1
264 163.37 temperature 25 720 < th dose dependent rect. 21 9
269 163.40 temperature 20 90 > th dose dependent rect. 21 22
274 163.44 temperature 20 4320 > th dose independent rect. 22 1
276 163.44 humidity 90 43200 > th dose independent rect. 13 4
283 163.49 temperature 20 4320 > th dose independent rect. 16 8
287 163.50 temperature 10 30 > th dose dependent rect. 21 23
288 163.51 temperature 20 720 > th dose dependent rect. 3 6
295 163.55 temperature 20 4320 < th dose independent rect. 22 1
297 163.55 humidity 50 43200 < th dose dependent rect. 19 2
300 163.57 wind 3 43200 < th dose independent rect. 19 2
304 163.58 wind 3 43200 > th dose independent rect. 19 2
307 163.59 radiation 1 14400 > th dose independent rect. 8 9
312 163.60 radiation 1 14400 < th dose independent rect. 8 9
316 163.61 humidity 90 270 < th dose independent rect. 5 1
326 163.64 radiation 1 14400 < th dose independent rect. 10 7
329 163.64 wind 3 14400 < th dose dependent rect. 5 6
334 163.67 wind 9 14400 > th dose independent rect. 23 2
341 163.69 atmosphere 1015 43200 > th dose dependent rect. 19 3
346 163.71 atmosphere 1015 43200 > th dose dependent rect. 11 11
352 163.73 wind 3 43200 < th dose dependent rect. 9 1
353 163.73 wind 3 43200 < th dose dependent rect. 19 1
356 163.73 atmosphere 1015 43200 > th dose dependent rect. 16 7
371 163.75 humidity 90 43200 > th dose independent rect. 15 2
387 163.77 atmosphere 1015 43200 > th dose independent rect. 16 5
395 163.78 atmosphere 1015 43200 > th dose dependent sin 17 NA
433 163.84 temperature 20 720 < th dose independent sin 9 NA
434 163.84 temperature 25 720 > th dose independent rect. 3 6
438 163.84 atmosphere 1015 43200 > th dose dependent rect. 12 4
441 163.84 atmosphere 1015 43200 > th dose dependent rect. 11 8
446 163.85 atmosphere 1015 43200 > th dose dependent rect. 13 1
448 163.86 temperature 20 720 > th dose independent sin 10 NA
452 163.86 wind 3 14400 < th dose dependent rect. 7 2
453 163.86 radiation 30 1440 > th dose dependent rect. 15 2
487 163.88 atmosphere 1015 43200 < th dose independent rect. 18 2
488 163.88 temperature 20 4320 < th dose independent rect. 16 8
510 163.91 wind 3 14400 < th dose independent rect. 6 6
513 163.91 wind 9 14400 > th dose dependent rect. 23 2
516 163.92 humidity 80 1440 > th dose independent rect. 24 6
523 163.93 wind 5 14400 < th dose dependent rect. 11 1
534 163.95 humidity 50 43200 < th dose independent rect. 19 1
535 163.95 temperature 20 4320 > th dose independent rect. 19 4
536 163.95 atmosphere 1015 43200 < th dose independent rect. 14 6
569 163.98 wind 3 14400 < th dose independent rect. 5 9
577 163.99 humidity 80 1440 > th dose independent rect. 24 3
586 163.99 radiation 1 14400 < th dose dependent rect. 8 9
592 164.00 radiation 10 1440 < th dose independent rect. 20 10
609 164.01 temperature 20 90 > th dose dependent rect. 3 16
632 164.04 temperature 10 43200 > th dose independent rect. 9 1
633 164.04 radiation 10 1440 < th dose independent rect. 5 1
635 164.04 radiation 10 1440 < th dose independent rect. 2 4
708 164.10 wind 1 14400 > th dose independent rect. 4 8
724 164.11 wind 3 14400 > th dose independent rect. 7 7
740 164.12 atmosphere 1015 43200 > th dose independent rect. 13 5
749 164.13 atmosphere 1015 43200 < th dose independent rect. 14 3
763 164.13 temperature 10 30 > th dose dependent rect. 3 23
773 164.14 wind 3 14400 < th dose dependent rect. 21 15
835 164.20 temperature 20 270 > th dose independent sin 7 NA
860 164.22 atmosphere 1015 43200 > th dose independent rect. 6 13
863 164.22 wind 9 14400 > th dose dependent rect. 16 1
872 164.23 atmosphere 1015 43200 < th dose independent rect. 6 13
909 164.25 wind 9 14400 > th dose independent rect. 16 1
925 164.26 atmosphere 1015 43200 > th dose independent rect. 14 1
941 164.26 atmosphere 1015 43200 > th dose dependent rect. 24 1
953 164.27 wind 3 14400 < th dose dependent rect. 21 5
974 164.29 wind 9 14400 < th dose independent rect. 16 1
990 164.29 wind 3 14400 < th dose dependent rect. 1 11