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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0317800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pollen allergen Lol p2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0255) R2 : 0.00576
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0874 (0.0537) R2dN8 : 0.00744 R2N8 : 0.00576
σ : 0.481
deviance : 106.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.3 0.439 2.81 0.134 0.0706 0.595 -0.405 2.36 0.161 5.94 1000 5976 -- --
92.21 0.447 2.83 0.077 0.0755 0.78 -0.396 -- 0.174 5.76 1001 6173 -- --
87.66 0.436 2.81 0.132 0.0711 0.608 -- 2.41 0.162 7.04 1000 5948 -- --
92.59 0.448 2.83 0.0772 0.0747 0.778 -- -- 0.175 6.86 1001 6216 -- --
87.93 0.437 2.81 0.134 -- 0.61 -- 2.42 0.163 -- 1000 5927 -- --
104.73 0.48 2.84 0.17 0.0759 -- -0.366 -- 0.103 6.08 -- -- -- --
105.02 0.48 2.84 0.167 0.0771 -- -- -- 0.105 7.18 -- -- -- --
92.88 0.449 2.83 0.0773 -- 0.776 -- -- 0.175 -- 1001 6220 -- --
92.73 0.449 2.83 -- 0.0771 0.787 -- -- 0.166 6.79 1001 6176 -- --
105.34 0.48 2.84 0.169 -- -- -- -- 0.106 -- -- -- -- --
105.76 0.481 2.85 -- 0.0789 -- -- -- 0.0861 7.05 -- -- -- --
93.04 0.449 2.83 -- -- 0.788 -- -- 0.167 -- 1001 6195 -- --
106.09 0.481 2.85 -- -- -- -- -- 0.0874 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.25 humidity 80 10 < th dose dependent rect. 2 5
3 80.47 humidity 80 10 < th dose independent rect. 2 4
6 80.63 humidity 80 270 < th dose independent rect. 1 3
7 80.65 humidity 80 270 < th dose dependent rect. 1 3
9 80.71 wind 7 1440 > th dose independent rect. 8 1
14 80.89 humidity 90 1440 < th dose dependent rect. 3 1
15 80.92 radiation 20 1440 > th dose independent rect. 6 1
29 80.93 wind 7 1440 < th dose independent rect. 8 1
34 81.06 humidity 80 270 < th dose independent rect. 2 1
35 81.06 humidity 80 270 < th dose dependent rect. 2 1
44 81.62 temperature 20 720 < th dose independent rect. 18 2
46 81.74 humidity 80 10 < th dose independent rect. 20 11
59 82.06 temperature 20 720 < th dose independent rect. 10 10
70 82.25 wind 7 4320 < th dose independent rect. 18 3
79 82.45 wind 9 4320 < th dose independent rect. 18 9
82 82.51 humidity 80 270 < th dose independent rect. 23 6
83 82.52 wind 5 4320 > th dose dependent rect. 20 2
85 82.54 wind 7 4320 > th dose independent rect. 18 3
101 82.74 wind 7 4320 > th dose dependent rect. 18 3
119 82.93 wind 9 4320 > th dose dependent rect. 20 1
162 83.14 wind 5 1440 > th dose dependent rect. 8 1
219 83.56 humidity 90 1440 < th dose dependent rect. 23 5
222 83.61 humidity 90 1440 < th dose dependent rect. 23 8
280 84.41 humidity 80 10 < th dose independent rect. 24 7
285 84.44 humidity 80 270 < th dose dependent rect. 21 9
286 84.45 humidity 90 1440 < th dose dependent rect. 2 5
330 85.00 humidity 70 1440 > th dose dependent rect. 3 1
347 85.15 atmosphere 995 14400 < th dose independent rect. 18 1
352 85.15 atmosphere 995 14400 < th dose dependent rect. 18 1
374 85.18 humidity 90 1440 < th dose independent rect. 2 1
376 85.18 atmosphere 995 14400 > th dose independent rect. 17 2
397 85.34 humidity 70 1440 > th dose dependent rect. 2 5
398 85.36 humidity 60 1440 > th dose dependent rect. 24 7
435 85.70 temperature 20 720 > th dose independent rect. 13 8
492 85.85 atmosphere 995 14400 > th dose independent rect. 7 12
493 85.85 atmosphere 995 14400 > th dose independent rect. 7 14
560 86.15 humidity 80 1440 < th dose independent rect. 22 1
592 86.18 humidity 90 1440 < th dose dependent rect. 24 1
621 86.24 humidity 90 1440 < th dose independent rect. 24 7
663 86.39 humidity 80 10 < th dose dependent rect. 20 11
666 86.43 humidity 80 1440 > th dose dependent rect. 5 1
673 86.48 wind 7 1440 < th dose independent rect. 1 8
684 86.53 temperature 20 720 > th dose independent rect. 11 8
719 86.69 radiation 1 14400 < th dose dependent rect. 23 4
775 86.96 radiation 1 14400 < th dose dependent rect. 19 8
780 86.99 humidity 90 1440 > th dose independent rect. 5 1
914 87.30 atmosphere 995 14400 < th dose dependent sin 0 NA
920 87.31 atmosphere 995 14400 > th dose independent rect. 20 20
923 87.32 atmosphere 995 14400 > th dose independent sin 22 NA
924 87.32 atmosphere 995 14400 < th dose independent sin 22 NA
969 87.41 atmosphere 995 14400 > th dose independent sin 3 NA