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Os04g0316200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.98 (0.0839) R2 : 0.486
β1 : -2.79 (0.376) R2dD : 0.108 R2D : 0.0944
β2 : 1.99 (0.194) R2dC : 0.12 R2C : 0.1
β3 : 5.64 (0.408) R2dE : 0.287 R2E : 0.304
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.02 (1.53) R2dD*E : 0.0246 R2D*E : -0.127
γ1 : -0.571 (0.182) R2dN8 : 0.0172 R2N8 : 0.0208
σ : 1.48
deviance : 1013.46
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C
peak time of C : 2.35
E
wheather : radiation
threshold : 0.965
memory length : 1441
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 19.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1012.23 1.49 7.98 -2.76 2 5.66 0.625 4.98 -0.567 2.29 0.9627 1441 11 19.9
1039.11 1.5 7.98 -1.96 2.1 5.4 0.84 -- -0.443 2.1 0.9801 1434 11 19.8
1013.46 1.48 7.98 -2.79 1.99 5.64 -- 5.02 -0.571 2.35 0.965 1441 11 19.9
1037.45 1.5 7.98 -2.09 1.94 5.12 -- -- -0.524 2.34 0.9907 1441 11 19.8
1069.28 1.52 7.98 -2.8 -- 5.82 -- 4.98 -0.6 -- 1 1557 11.1 19.8
1447.83 1.78 8.06 -3.15 1.97 -- -0.0546 -- -1.13 2.14 -- -- -- --
1447.84 1.78 8.06 -3.15 1.97 -- -- -- -1.13 2.14 -- -- -- --
1078.5 1.53 7.95 -2.29 -- 5.59 -- -- -0.504 -- 1.15 1567 11.1 19.9
1146.72 1.58 7.97 -- 1.92 5.75 -- -- -0.299 2.31 0.9911 1440 11 19.9
1679.41 1.91 8.04 -3.07 -- -- -- -- -1.09 -- -- -- -- --
1709.25 1.93 7.98 -- 1.91 -- -- -- -0.782 2.1 -- -- -- --
1198 1.61 7.83 -- -- 5.94 -- -- -0.219 -- 0.84 1552 10.9 19.9
1927.53 2.05 7.97 -- -- -- -- -- -0.745 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1014.28 radiation 1 1440 < th dose independent rect. 11 20
6 1023.40 radiation 1 1440 > th dose independent rect. 11 20
17 1034.35 radiation 1 14400 < th dose dependent rect. 4 1
32 1047.08 humidity 80 1440 < th dose dependent rect. 15 5
37 1050.30 humidity 80 1440 < th dose dependent rect. 15 17
55 1053.87 humidity 80 1440 < th dose dependent rect. 15 11
57 1054.00 radiation 1 1440 < th dose independent rect. 5 19
61 1054.18 humidity 70 1440 < th dose independent sin 15 NA
64 1054.26 radiation 1 1440 < th dose independent rect. 5 22
75 1054.69 radiation 1 1440 < th dose independent rect. 5 14
81 1055.11 radiation 1 1440 < th dose independent rect. 2 22
92 1055.37 radiation 1 1440 < th dose independent rect. 20 23
93 1055.41 radiation 1 1440 < th dose independent no NA NA
101 1055.50 radiation 1 1440 < th dose independent sin 14 NA
119 1055.76 radiation 1 1440 < th dose dependent rect. 9 21
121 1055.80 radiation 1 1440 < th dose independent rect. 2 17
138 1055.99 humidity 50 1440 > th dose dependent rect. 15 6
147 1056.38 humidity 80 1440 < th dose dependent sin 15 NA
151 1056.71 radiation 1 1440 < th dose dependent rect. 11 19
153 1056.84 radiation 1 1440 < th dose independent sin 23 NA
160 1057.27 humidity 50 1440 > th dose dependent rect. 13 8
180 1058.45 humidity 70 1440 < th dose independent rect. 13 7
198 1059.06 humidity 50 720 > th dose dependent rect. 17 6
204 1059.50 radiation 1 1440 < th dose dependent sin 22 NA
206 1059.72 radiation 1 1440 < th dose independent rect. 17 23
225 1061.31 radiation 1 14400 < th dose dependent rect. 22 7
232 1062.01 radiation 1 1440 < th dose dependent rect. 9 16
234 1062.09 radiation 1 1440 > th dose independent rect. 5 14
267 1062.74 radiation 1 1440 > th dose independent no NA NA
317 1062.93 radiation 1 1440 < th dose dependent rect. 11 14
332 1063.43 radiation 1 1440 < th dose dependent rect. 9 10
339 1063.62 radiation 1 1440 > th dose independent sin 23 NA
355 1064.05 humidity 70 1440 > th dose independent sin 15 NA
358 1064.10 radiation 1 1440 > th dose independent sin 14 NA
366 1064.34 radiation 1 1440 < th dose dependent rect. 11 8
458 1068.10 radiation 1 1440 > th dose independent rect. 16 23
472 1069.24 radiation 1 1440 < th dose independent rect. 11 13
474 1069.35 radiation 1 1440 < th dose independent rect. 11 16
489 1070.14 radiation 1 1440 < th dose independent rect. 11 8
514 1071.19 humidity 70 1440 > th dose independent rect. 13 11
520 1071.38 humidity 70 1440 > th dose independent rect. 13 14
526 1071.50 humidity 70 1440 > th dose independent rect. 13 16
557 1072.52 wind 7 43200 > th dose dependent rect. 11 7
585 1073.29 temperature 20 14400 > th dose independent rect. 4 1
600 1073.44 temperature 30 14400 < th dose independent rect. 15 2
609 1073.60 temperature 25 1440 > th dose dependent rect. 14 5
616 1073.70 temperature 25 1440 > th dose dependent rect. 14 11
638 1074.27 temperature 20 14400 < th dose independent rect. 4 1
646 1074.45 wind 9 43200 < th dose independent rect. 14 4
648 1074.68 temperature 30 14400 > th dose independent rect. 15 2
658 1075.22 radiation 1 1440 < th dose dependent rect. 5 13
674 1075.76 wind 9 43200 < th dose independent rect. 11 11
676 1075.78 radiation 1 1440 > th dose independent rect. 11 8
697 1075.98 radiation 1 1440 < th dose dependent rect. 5 19
702 1076.13 wind 9 43200 > th dose independent rect. 11 11
709 1076.22 radiation 1 1440 < th dose dependent rect. 5 22
753 1077.42 wind 9 43200 > th dose independent rect. 14 5
823 1078.73 wind 9 43200 < th dose independent rect. 11 8
854 1079.05 humidity 50 1440 > th dose dependent sin 19 NA
857 1079.11 humidity 80 1440 < th dose dependent rect. 23 21
874 1079.48 radiation 1 1440 < th dose dependent rect. 20 22
883 1079.67 humidity 80 1440 < th dose dependent rect. 7 13
925 1080.37 radiation 1 1440 < th dose dependent rect. 2 16
936 1080.55 temperature 30 14400 < th dose independent rect. 14 10
945 1080.63 temperature 30 14400 < th dose independent rect. 14 18
953 1080.67 temperature 30 14400 < th dose independent rect. 14 13
956 1080.68 radiation 1 1440 < th dose dependent rect. 2 22
957 1080.69 temperature 30 14400 < th dose independent rect. 14 15
958 1080.70 temperature 25 14400 > th dose dependent rect. 17 1
964 1080.80 radiation 1 1440 < th dose dependent rect. 11 23
974 1080.92 radiation 1 1440 < th dose dependent no NA NA
983 1081.04 temperature 25 1440 > th dose dependent sin 15 NA