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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0312000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.74 (--) R2 : -2.05
β1 : 1.8 (--) R2dD : -1.38 R2D : -2.11
β2 : 0.0665 (--) R2dC : 0.00526 R2C : -0.711
β3 : 13.6 (--) R2dE : -- R2E : --
β4 : -0.247 (--) R2dD*C : -0.00745 R2D*C : -0.72
β5 : -83.4 (--) R2dD*E : -- R2D*E : --
γ1 : 0.0329 (--) R2dN8 : 0.055 R2N8 : -0.684
σ : 0.332
deviance : 49.78
__
_____
C
peak time of C : 3.37
E
wheather : atmosphere
threshold : 1
memory length : 7
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.78 0.332 2.74 1.8 0.0665 13.6 -0.247 -83.4 0.0329 3.37 1 7 -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
52.87 0.341 3.02 0.147 0.0948 -- -0.148 -- 0.0234 4.23 -- -- -- --
52.9 0.341 3.02 0.149 0.0975 -- -- -- 0.0242 5.01 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
53.4 0.341 3.02 0.152 -- -- -- -- 0.0267 -- -- -- -- --
53.49 0.342 3.03 -- 0.1 -- -- -- 0.00767 4.96 -- -- -- --
-- -- -- -- -- -- -- -- -- -- -- -- -- --
54.02 0.343 3.03 -- -- -- -- -- 0.00984 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.76 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 46.09 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 46.17 temperature 25.0 90 > th dose independent rect. 2 1
6 46.18 temperature 25.0 90 > th dose dependent rect. 2 1
7 46.19 wind 9.0 1440 < th dose independent rect. 3 1
8 46.19 temperature 10.0 1440 > th dose independent rect. 3 1
11 46.19 temperature 30.0 1440 < th dose independent rect. 3 1
15 46.19 humidity 50.0 1440 > th dose independent rect. 3 1
24 46.19 atmosphere 995.0 1440 > th dose independent rect. 3 1
25 46.19 radiation 1.0 1440 < th dose independent rect. 3 1
45 46.19 temperature 10.0 1440 > th dose independent rect. 4 23
49 46.19 radiation 1.0 1440 < th dose dependent rect. 3 1
69 46.21 wind 3.0 30 < th dose independent rect. 2 1
72 46.21 humidity 90.0 30 > th dose independent rect. 2 1
73 46.21 wind 5.0 30 < th dose dependent rect. 2 1
79 46.22 temperature 10.0 30 > th dose independent rect. 2 1
81 46.22 temperature 30.0 30 < th dose independent rect. 2 1
82 46.22 humidity 50.0 30 > th dose independent rect. 2 1
85 46.22 atmosphere 995.0 30 > th dose independent rect. 2 1
87 46.22 atmosphere 1010.0 30 < th dose independent rect. 2 1
89 46.22 radiation 1.0 30 < th dose independent rect. 2 1
94 46.22 precipitation 0.1 30 < th dose independent rect. 2 1
95 46.22 temperature 10.0 30 > th dose independent rect. 3 23
97 46.22 humidity 50.0 30 > th dose dependent rect. 2 1
101 46.22 atmosphere 995.0 30 > th dose dependent rect. 2 1
104 46.22 radiation 1.0 30 < th dose dependent rect. 2 1
109 46.22 precipitation 0.1 30 < th dose dependent rect. 2 1
110 46.23 atmosphere 1015.0 30 < th dose dependent rect. 2 1
122 46.29 precipitation 0.1 30 < th dose independent rect. 3 23
124 46.29 temperature 30.0 30 < th dose dependent rect. 2 1
125 46.29 precipitation 0.1 30 < th dose dependent rect. 3 23
126 46.30 wind 1.0 30 > th dose independent rect. 2 1
178 46.65 atmosphere 1000.0 90 < th dose dependent rect. 4 6
190 46.92 wind 9.0 30 < th dose independent rect. 3 23
201 47.29 atmosphere 1000.0 10 < th dose independent rect. 5 1
208 47.29 atmosphere 1000.0 10 < th dose dependent rect. 5 1
260 47.66 atmosphere 1000.0 720 < th dose dependent rect. 4 1
264 47.71 humidity 50.0 30 > th dose independent rect. 3 23
268 47.75 atmosphere 1000.0 10 < th dose independent rect. 5 6
282 47.88 atmosphere 1000.0 720 > th dose independent rect. 3 8
298 48.01 atmosphere 1000.0 720 < th dose dependent rect. 1 5
309 48.09 temperature 25.0 720 > th dose dependent rect. 4 1
310 48.10 temperature 25.0 720 > th dose dependent rect. 3 3
376 48.49 atmosphere 995.0 1440 > th dose independent rect. 3 12
400 48.58 atmosphere 1000.0 720 > th dose independent rect. 23 8
401 48.58 wind 1.0 10 > th dose independent rect. 23 23
429 48.69 atmosphere 995.0 1440 > th dose independent rect. 3 14
457 48.77 atmosphere 1000.0 270 < th dose independent rect. 1 9
459 48.77 atmosphere 1000.0 270 < th dose dependent sin 6 NA
471 48.79 atmosphere 1000.0 270 < th dose independent rect. 2 5
508 48.88 humidity 90.0 90 < th dose independent rect. 2 1
510 48.88 atmosphere 1000.0 720 < th dose dependent sin 8 NA
517 48.90 atmosphere 1000.0 720 > th dose independent rect. 19 16
519 48.91 temperature 10.0 720 > th dose independent rect. 15 8
520 48.91 temperature 10.0 720 > th dose independent rect. 23 16
523 48.92 temperature 25.0 720 > th dose independent rect. 3 3
525 48.93 temperature 10.0 720 > th dose independent rect. 3 8
527 48.93 temperature 10.0 720 > th dose independent rect. 11 16
547 49.00 precipitation 0.1 720 < th dose independent rect. 15 8
551 49.00 precipitation 0.1 720 < th dose dependent rect. 15 8
554 49.01 wind 9.0 720 < th dose independent rect. 3 8
577 49.06 humidity 50.0 720 > th dose independent rect. 3 8
579 49.06 temperature 25.0 30 > th dose dependent rect. 5 1
600 49.11 atmosphere 1000.0 720 < th dose independent rect. 22 8
618 49.14 temperature 25.0 4320 > th dose independent rect. 3 1
623 49.15 atmosphere 995.0 1440 > th dose independent rect. 12 17
633 49.17 atmosphere 995.0 1440 > th dose independent rect. 14 15
634 49.17 atmosphere 995.0 720 > th dose independent rect. 23 16
649 49.19 atmosphere 995.0 1440 > th dose independent rect. 3 21
670 49.22 wind 7.0 1440 < th dose independent rect. 23 1
671 49.22 atmosphere 995.0 1440 > th dose independent rect. 8 21
678 49.23 atmosphere 995.0 1440 > th dose independent rect. 16 13
679 49.23 atmosphere 1015.0 30 < th dose independent rect. 3 23
688 49.24 humidity 90.0 30 < th dose independent rect. 22 1
698 49.25 temperature 10.0 1440 > th dose independent rect. 23 1
701 49.25 temperature 30.0 1440 < th dose independent rect. 23 1
705 49.25 humidity 50.0 1440 > th dose independent rect. 23 1
715 49.25 atmosphere 995.0 1440 > th dose independent rect. 23 1
716 49.25 radiation 1.0 1440 < th dose independent rect. 23 1
736 49.25 atmosphere 1000.0 10 < th dose independent rect. 1 10
740 49.25 temperature 10.0 1440 > th dose independent rect. 24 23
744 49.25 radiation 1.0 1440 < th dose dependent rect. 23 1
763 49.27 atmosphere 1015.0 720 < th dose independent rect. 3 8
770 49.28 temperature 25.0 270 > th dose independent rect. 22 5
772 49.28 atmosphere 1000.0 90 > th dose independent rect. 3 12
776 49.28 temperature 25.0 30 > th dose dependent rect. 22 1
777 49.28 humidity 90.0 30 < th dose dependent rect. 22 1
778 49.28 atmosphere 1005.0 30 > th dose dependent rect. 22 1
786 49.29 atmosphere 995.0 1440 > th dose independent rect. 10 19
796 49.30 wind 1.0 30 > th dose independent rect. 22 1
798 49.30 temperature 25.0 30 > th dose independent rect. 22 1
799 49.30 atmosphere 1005.0 30 > th dose independent rect. 22 1
800 49.30 precipitation 0.1 30 < th dose independent rect. 22 1
805 49.30 temperature 10.0 30 > th dose dependent rect. 22 1
810 49.30 precipitation 0.1 30 < th dose dependent rect. 22 1
828 49.32 wind 5.0 30 < th dose independent rect. 22 1
831 49.32 temperature 10.0 30 > th dose independent rect. 22 1
833 49.32 temperature 30.0 30 < th dose independent rect. 22 1
834 49.32 humidity 50.0 30 > th dose independent rect. 22 1
838 49.32 atmosphere 1010.0 30 < th dose independent rect. 22 1
840 49.32 radiation 1.0 30 < th dose independent rect. 22 1
849 49.32 temperature 10.0 30 > th dose independent rect. 23 23
850 49.32 wind 9.0 30 < th dose dependent rect. 22 1
851 49.32 radiation 1.0 30 < th dose dependent rect. 22 1
878 49.34 humidity 50.0 30 > th dose dependent rect. 22 1
883 49.35 atmosphere 1000.0 270 > th dose independent sin 7 NA
892 49.35 temperature 30.0 30 < th dose independent rect. 3 23
893 49.35 wind 1.0 30 > th dose dependent rect. 22 1
906 49.36 precipitation 0.1 720 < th dose independent rect. 11 16
907 49.36 atmosphere 995.0 1440 > th dose independent rect. 3 18
917 49.36 precipitation 0.1 720 < th dose dependent rect. 11 16
918 49.37 atmosphere 1000.0 270 < th dose independent sin 6 NA
949 49.39 atmosphere 1000.0 720 > th dose independent rect. 21 9
961 49.40 atmosphere 995.0 1440 > th dose independent rect. 12 12
967 49.40 atmosphere 1015.0 30 < th dose dependent rect. 22 1