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Os04g0311400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cysteine proteinase 1 precursor (EC 3.4.22.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0263) R2 : 0.172
β1 : -0.937 (0.0962) R2dD : 0.178 R2D : 0.161
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.121 (0.0561) R2dN8 : 0.0112 R2N8 : -0.0063
σ : 0.493
deviance : 111.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.44 0.444 11.7 -0.952 0.419 -0.391 -0.228 -2.15 -0.187 8.49 1004 4425 -- --
94.49 0.453 11.7 -0.885 0.426 -0.527 -0.238 -- -0.217 8.46 1004 4154 -- --
89.59 0.441 11.7 -0.957 0.42 -0.391 -- -2.15 -0.187 8.37 1004 4423 -- --
94.59 0.453 11.7 -0.887 0.424 -0.522 -- -- -0.201 8.36 1003 3743 -- --
99.44 0.464 11.7 -0.939 -- -0.38 -- -2.21 -0.179 -- 1004 4431 -- --
101.34 0.472 11.7 -0.932 0.421 -- -0.21 -- -0.125 8.49 -- -- -- --
101.48 0.472 11.7 -0.939 0.423 -- -- -- -0.125 8.39 -- -- -- --
104.52 0.476 11.7 -0.883 -- -0.525 -- -- -0.195 -- 1003 3688 -- --
109.74 0.488 11.7 -- 0.425 -0.796 -- -- -0.155 8.69 999.2 13837 -- --
111.42 0.493 11.7 -0.937 -- -- -- -- -0.121 -- -- -- -- --
124.72 0.522 11.7 -- 0.419 -- -- -- -0.0204 8.56 -- -- -- --
119.52 0.509 11.7 -- -- -0.748 -- -- -0.124 -- 999.1 13389 -- --
134.56 0.541 11.7 -- -- -- -- -- -0.0167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.77 temperature 20 270 > th dose independent rect. 3 16
3 86.04 temperature 15 270 > th dose dependent rect. 2 7
5 86.29 temperature 20 270 > th dose independent rect. 3 6
14 87.09 wind 5 14400 > th dose independent rect. 15 1
17 87.35 wind 5 14400 < th dose independent rect. 15 1
22 87.46 wind 1 43200 < th dose dependent rect. 2 1
25 87.47 atmosphere 1005 90 > th dose independent rect. 3 6
27 87.56 atmosphere 1005 270 > th dose independent rect. 3 4
28 87.64 atmosphere 1000 90 > th dose dependent rect. 3 6
33 87.93 wind 5 14400 > th dose dependent rect. 15 1
43 88.26 atmosphere 1005 4320 > th dose independent rect. 8 2
45 88.32 atmosphere 1005 4320 < th dose independent rect. 8 1
56 88.51 atmosphere 1000 270 > th dose independent rect. 3 16
60 88.56 atmosphere 1000 270 > th dose dependent rect. 3 4
65 88.67 temperature 10 270 > th dose dependent rect. 3 17
68 88.71 wind 1 43200 < th dose dependent rect. 4 1
70 88.75 wind 1 43200 < th dose independent rect. 4 1
86 88.97 wind 1 43200 < th dose independent rect. 2 1
135 89.37 temperature 30 43200 > th dose dependent rect. 8 1
153 89.42 wind 1 43200 > th dose independent rect. 2 1
165 89.51 wind 1 43200 > th dose independent rect. 4 1
175 89.57 atmosphere 1000 10 > th dose dependent rect. 3 7
183 89.61 atmosphere 1000 30 > th dose independent rect. 6 14
198 89.72 temperature 10 30 > th dose dependent rect. 6 16
214 89.81 humidity 90 1440 < th dose dependent rect. 18 1
225 89.86 wind 7 43200 < th dose dependent rect. 14 1
227 89.87 atmosphere 1005 14400 > th dose independent rect. 5 1
229 89.88 atmosphere 1005 14400 < th dose independent rect. 5 1
232 89.90 temperature 30 43200 > th dose independent rect. 8 1
249 89.92 radiation 20 90 < th dose independent rect. 13 22
252 89.93 atmosphere 1000 10 > th dose independent rect. 6 16
253 89.93 humidity 60 1440 > th dose dependent rect. 18 1
256 89.94 humidity 90 14400 < th dose independent rect. 1 5
264 89.97 temperature 10 30 > th dose dependent rect. 6 14
277 90.00 temperature 20 720 > th dose dependent rect. 6 1
281 90.01 radiation 20 10 < th dose independent rect. 6 16
282 90.02 humidity 90 14400 > th dose independent rect. 1 6
293 90.05 wind 9 43200 > th dose dependent rect. 20 1
353 90.25 temperature 30 43200 < th dose independent rect. 7 2
358 90.26 temperature 30 43200 < th dose independent rect. 5 4
367 90.28 humidity 90 14400 > th dose independent rect. 4 2
370 90.28 radiation 30 90 < th dose independent rect. 3 8
373 90.28 atmosphere 1005 4320 < th dose dependent rect. 8 1
382 90.30 humidity 80 270 > th dose independent rect. 3 5
396 90.34 wind 9 4320 > th dose independent rect. 19 2
406 90.35 temperature 30 43200 < th dose independent rect. 19 14
422 90.37 atmosphere 1005 4320 < th dose dependent rect. 3 11
423 90.37 temperature 15 30 > th dose dependent rect. 4 18
436 90.38 atmosphere 1005 4320 < th dose dependent rect. 3 9
442 90.39 wind 9 4320 > th dose independent rect. 19 4
463 90.41 wind 9 4320 > th dose independent rect. 19 7
466 90.41 temperature 30 43200 < th dose independent rect. 22 11
502 90.45 atmosphere 1005 4320 < th dose independent sin 3 NA
518 90.46 wind 9 4320 > th dose dependent rect. 19 7
525 90.47 atmosphere 1005 4320 < th dose dependent sin 3 NA
531 90.48 wind 9 4320 > th dose dependent rect. 19 5
541 90.49 atmosphere 1000 30 > th dose independent rect. 4 16
544 90.49 radiation 1 14400 < th dose dependent rect. 23 5
555 90.50 radiation 20 10 < th dose independent rect. 6 14
560 90.50 temperature 15 30 > th dose dependent rect. 4 16
567 90.51 atmosphere 1005 4320 < th dose dependent rect. 11 1
596 90.54 radiation 20 90 < th dose independent rect. 15 19
605 90.55 wind 9 4320 < th dose independent rect. 19 7
618 90.56 wind 9 4320 < th dose independent rect. 19 4
636 90.57 radiation 30 270 < th dose dependent rect. 3 6
638 90.57 temperature 15 720 > th dose dependent rect. 21 12
644 90.58 wind 9 14400 < th dose independent rect. 20 1
658 90.59 radiation 20 90 < th dose independent rect. 6 14
699 90.63 atmosphere 1005 4320 < th dose dependent rect. 13 1
725 90.65 radiation 1 14400 < th dose dependent rect. 23 1
738 90.66 atmosphere 1005 4320 > th dose independent sin 4 NA
756 90.67 wind 9 4320 > th dose dependent sin 13 NA
764 90.67 radiation 40 10 < th dose dependent rect. 6 16
784 90.69 atmosphere 995 43200 > th dose independent rect. 15 6
803 90.70 atmosphere 995 43200 < th dose independent rect. 15 3
843 90.73 humidity 70 720 > th dose independent rect. 18 1
862 90.74 wind 1 43200 < th dose independent rect. 2 3
863 90.74 atmosphere 995 43200 > th dose independent rect. 15 3
917 90.76 atmosphere 1000 30 > th dose independent rect. 4 18
918 90.76 atmosphere 1005 4320 < th dose dependent no NA NA
927 90.76 atmosphere 1005 4320 < th dose dependent rect. 15 23
942 90.77 atmosphere 1005 4320 < th dose dependent rect. 13 23
948 90.78 atmosphere 995 14400 > th dose dependent rect. 23 1
958 90.78 atmosphere 1005 4320 < th dose dependent rect. 11 23
965 90.79 atmosphere 1005 4320 < th dose independent rect. 19 17