Os04g0310500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial ribosome domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0310500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Mitochondrial ribosome domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.51 | 0.197 | 12.2 | -0.778 | 0.375 | -0.266 | 0.264 | -1.06 | -0.362 | 23.8 | 20.3 | 704 | -- | -- |
| 20.31 | 0.21 | 12.2 | -0.594 | 0.357 | -0.157 | -0.0305 | -- | -0.313 | 23.7 | 21 | 643 | -- | -- |
| 17.78 | 0.196 | 12.2 | -0.777 | 0.37 | -0.251 | -- | -0.957 | -0.358 | 23.9 | 20.5 | 699 | -- | -- |
| 20.27 | 0.21 | 12.2 | -0.604 | 0.356 | -0.152 | -- | -- | -0.315 | 23.9 | 21.08 | 642 | -- | -- |
| 25.49 | 0.235 | 12.2 | -0.873 | -- | -0.208 | -- | -1.18 | -0.384 | -- | 21.08 | 1743 | -- | -- |
| 21.05 | 0.215 | 12.2 | -0.651 | 0.348 | -- | 0.0267 | -- | -0.354 | 0.168 | -- | -- | -- | -- |
| 21.06 | 0.215 | 12.2 | -0.652 | 0.348 | -- | -- | -- | -0.354 | 0.164 | -- | -- | -- | -- |
| 27.01 | 0.243 | 12.1 | -0.595 | -- | -0.166 | -- | -- | -0.305 | -- | 21.7 | 1724 | -- | -- |
| 22.81 | 0.222 | 12.1 | -- | 0.358 | -0.452 | -- | -- | -0.127 | 0.178 | 21.8 | 47520 | -- | -- |
| 28.68 | 0.25 | 12.2 | -0.641 | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
| 32.27 | 0.266 | 12.1 | -- | 0.339 | -- | -- | -- | -0.282 | 0.0593 | -- | -- | -- | -- |
| 30.84 | 0.259 | 12.1 | -- | -- | -0.432 | -- | -- | -0.127 | -- | 22.06 | 47520 | -- | -- |
| 39.52 | 0.293 | 12.1 | -- | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.40 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 22 |
| 4 | 17.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 8 | 17.54 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 18 |
| 9 | 17.54 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 19 |
| 12 | 17.55 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 17 |
| 15 | 17.55 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 22 |
| 19 | 17.56 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 23 |
| 23 | 17.57 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 22 |
| 26 | 17.58 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 16 |
| 28 | 17.58 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 21 |
| 36 | 17.58 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 23 |
| 40 | 17.59 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 47 | 17.59 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 52 | 17.60 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 56 | 17.60 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 18 |
| 73 | 17.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 97 | 17.63 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 113 | 17.64 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 23 |
| 175 | 17.69 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 187 | 17.70 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 23 |
| 198 | 17.72 | temperature | 20 | 1440 | > th | dose independent | sin | 17 | NA |
| 208 | 17.73 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 209 | 17.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 225 | 17.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 239 | 17.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 262 | 17.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 375 | 17.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 16 |
| 511 | 17.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 685 | 18.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 847 | 18.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 867 | 18.12 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 942 | 18.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |