FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0309900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0508) R2 : 0.000508
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0515 (0.107) R2dN8 : 0.000656 R2N8 : 0.000508
σ : 0.957
deviance : 420.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
398.76 0.938 3.32 -1.31 0.15 8.08 -0.976 -42.3 -0.00625 1.88 1000 1021 -- --
409.93 0.95 3.06 0.0832 0.18 0.653 -0.989 -- -0.019 1.77 1000 1021 -- --
402.09 0.934 3.31 -1.25 0.145 7.6 -- -39.9 0.000669 3.02 1001 974 -- --
409.64 0.943 3.06 0.137 0.157 1.09 -- -- -0.0142 1.74 995 925 -- --
403.33 0.935 3.28 -1.14 -- 6.93 -- -36.1 0.00826 -- 1001 916 -- --
413.85 0.954 3.07 0.14 0.175 -- -0.999 -- -0.0413 1.76 -- -- -- --
417.7 0.957 3.06 0.171 0.181 -- -- -- -0.0362 2.52 -- -- -- --
410.92 0.944 3.06 0.129 -- 1.12 -- -- -0.0136 -- 995 925 -- --
409.93 0.943 3.06 -- 0.157 1.12 -- -- -0.017 2.93 994.9 912 -- --
419.62 0.957 3.06 0.179 -- -- -- -- -0.0316 -- -- -- -- --
418.47 0.957 3.07 -- 0.184 -- -- -- -0.0552 2.54 -- -- -- --
411.38 0.945 3.06 -- -- 1.14 -- -- -0.028 -- 994.9 910 -- --
420.47 0.957 3.07 -- -- -- -- -- -0.0515 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 391.30 temperature 25.0 90 > th dose independent rect. 5 1
2 391.80 temperature 25.0 90 > th dose dependent rect. 5 1
6 396.15 atmosphere 1000.0 10 < th dose independent rect. 5 1
13 396.15 atmosphere 1000.0 10 < th dose dependent rect. 5 1
32 396.69 atmosphere 1010.0 10 < th dose dependent rect. 6 1
34 396.99 atmosphere 1000.0 720 < th dose independent rect. 18 2
38 397.49 atmosphere 1000.0 90 < th dose independent rect. 18 2
39 397.49 atmosphere 1000.0 90 < th dose dependent rect. 18 2
45 397.59 atmosphere 1000.0 720 > th dose independent rect. 16 17
54 397.98 radiation 40.0 1440 < th dose independent rect. 15 15
60 398.59 radiation 40.0 1440 < th dose independent rect. 15 5
64 399.25 atmosphere 995.0 4320 < th dose dependent rect. 18 7
66 399.38 precipitation 0.1 4320 < th dose independent rect. 24 2
67 399.38 precipitation 0.1 4320 < th dose dependent rect. 24 2
70 399.72 precipitation 0.1 4320 > th dose independent rect. 24 2
71 399.72 precipitation 0.1 4320 > th dose dependent rect. 24 2
73 399.80 atmosphere 1000.0 720 > th dose independent rect. 6 22
75 399.82 atmosphere 1000.0 720 < th dose dependent rect. 1 19
82 400.06 humidity 70.0 90 < th dose independent rect. 18 1
86 400.11 atmosphere 1000.0 720 < th dose dependent rect. 8 22
91 400.22 temperature 25.0 10 > th dose dependent rect. 2 5
93 400.23 atmosphere 1000.0 720 > th dose independent rect. 21 22
96 400.28 atmosphere 995.0 4320 > th dose independent rect. 18 12
98 400.33 atmosphere 995.0 4320 < th dose independent rect. 18 12
110 400.36 atmosphere 1000.0 720 < th dose dependent rect. 13 17
111 400.36 atmosphere 1000.0 720 < th dose dependent rect. 11 19
113 400.37 atmosphere 995.0 4320 > th dose independent rect. 18 18
122 400.42 atmosphere 1000.0 720 < th dose dependent rect. 8 12
125 400.44 atmosphere 1000.0 720 < th dose dependent rect. 18 1
132 400.49 atmosphere 995.0 4320 < th dose independent sin 8 NA
134 400.49 atmosphere 1000.0 720 < th dose dependent rect. 13 21
160 400.62 precipitation 0.1 4320 < th dose independent rect. 23 4
162 400.62 atmosphere 1000.0 720 < th dose dependent rect. 17 3
163 400.62 precipitation 0.1 4320 < th dose dependent rect. 23 4
165 400.62 atmosphere 1000.0 720 < th dose dependent rect. 4 22
173 400.64 atmosphere 995.0 4320 < th dose dependent sin 10 NA
181 400.66 precipitation 0.1 4320 > th dose independent rect. 23 4
194 400.69 wind 1.0 30 < th dose independent rect. 6 1
216 400.74 atmosphere 995.0 4320 > th dose independent rect. 17 4
226 400.75 atmosphere 1000.0 720 < th dose dependent no NA NA
230 400.77 atmosphere 1000.0 720 > th dose independent rect. 1 17
239 400.82 atmosphere 1010.0 10 < th dose independent rect. 6 1
240 400.82 atmosphere 995.0 4320 < th dose dependent rect. 17 13
268 400.88 atmosphere 1000.0 720 < th dose independent rect. 8 6
272 400.89 atmosphere 1000.0 720 > th dose independent rect. 6 13
285 400.97 atmosphere 1000.0 720 < th dose dependent sin 19 NA
310 401.06 atmosphere 995.0 4320 > th dose independent sin 9 NA
314 401.08 atmosphere 1000.0 720 < th dose dependent rect. 13 7
335 401.16 atmosphere 1000.0 720 > th dose independent rect. 7 11
343 401.20 atmosphere 1000.0 720 < th dose dependent rect. 15 5
345 401.20 atmosphere 1000.0 720 < th dose dependent rect. 18 23
356 401.25 temperature 10.0 90 > th dose dependent rect. 19 12
367 401.29 temperature 25.0 270 > th dose independent rect. 2 4
384 401.39 atmosphere 1000.0 720 > th dose independent rect. 7 8
411 401.53 atmosphere 1000.0 720 < th dose independent rect. 18 21
428 401.61 atmosphere 1000.0 720 > th dose independent rect. 7 17
429 401.61 atmosphere 1000.0 720 > th dose independent rect. 23 19
446 401.70 atmosphere 995.0 4320 > th dose independent rect. 6 15
465 401.74 atmosphere 1000.0 720 < th dose independent rect. 3 12
469 401.75 atmosphere 1000.0 720 > th dose independent rect. 16 23
533 401.91 atmosphere 1000.0 720 < th dose independent sin 3 NA
544 401.94 radiation 40.0 1440 < th dose independent rect. 15 11
546 401.95 temperature 30.0 1440 < th dose independent rect. 21 12
549 401.95 temperature 30.0 1440 > th dose dependent rect. 8 1
565 401.96 atmosphere 1000.0 720 > th dose independent rect. 16 9
580 402.00 atmosphere 1000.0 720 > th dose independent sin 4 NA
582 402.00 atmosphere 1000.0 720 > th dose independent rect. 12 16
608 402.08 atmosphere 1010.0 1440 < th dose independent rect. 17 1
687 402.28 atmosphere 1010.0 1440 < th dose independent rect. 12 6
695 402.29 atmosphere 1000.0 720 < th dose independent rect. 1 20
707 402.33 atmosphere 1010.0 1440 > th dose independent rect. 17 1
714 402.34 atmosphere 995.0 4320 > th dose independent rect. 13 9
730 402.38 atmosphere 1000.0 720 < th dose independent rect. 8 22
740 402.41 atmosphere 995.0 4320 > th dose independent rect. 8 14
746 402.42 atmosphere 995.0 4320 > th dose independent rect. 11 11
766 402.45 atmosphere 1000.0 1440 > th dose independent rect. 2 12
817 402.47 atmosphere 1000.0 720 < th dose dependent rect. 13 3
839 402.52 atmosphere 1000.0 720 < th dose independent no NA NA
865 402.56 atmosphere 995.0 4320 < th dose independent rect. 5 14
899 402.59 atmosphere 1000.0 1440 > th dose independent rect. 21 18
905 402.62 atmosphere 1010.0 1440 > th dose independent rect. 12 7
912 402.63 temperature 30.0 720 > th dose independent rect. 18 16
923 402.65 wind 9.0 14400 > th dose independent rect. 5 6
941 402.69 atmosphere 995.0 4320 < th dose independent sin 22 NA
947 402.70 atmosphere 995.0 4320 > th dose independent sin 22 NA
950 402.70 atmosphere 1000.0 720 < th dose independent rect. 12 23
992 402.74 atmosphere 1015.0 720 < th dose dependent rect. 19 1