Os04g0309600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Sucrose synthase.
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Os04g0309600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Sucrose synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 396.42 | 0.935 | 6.01 | -7.2 | 0.858 | 2.43 | -0.65 | -5.29 | -1.64 | 7.42 | 23.03 | 1385 | -- | -- |
| 400.02 | 0.932 | 5.88 | -5.85 | 0.879 | 2.01 | -0.357 | -- | -1.43 | 6.97 | 22.8 | 7071 | -- | -- |
| 397.57 | 0.929 | 6.01 | -7.21 | 0.858 | 2.42 | -- | -5.27 | -1.63 | 7.37 | 23.02 | 1389 | -- | -- |
| 400.66 | 0.932 | 5.88 | -5.83 | 0.86 | 1.99 | -- | -- | -1.4 | 7.15 | 22.91 | 7056 | -- | -- |
| 436.66 | 0.973 | 6.03 | -7.17 | -- | 2.44 | -- | -5.15 | -1.61 | -- | 23.07 | 1383 | -- | -- |
| 557.57 | 1.11 | 5.73 | -4.91 | 0.931 | -- | -0.509 | -- | -0.778 | 6.57 | -- | -- | -- | -- |
| 558.22 | 1.11 | 5.73 | -4.92 | 0.929 | -- | -- | -- | -0.776 | 6.53 | -- | -- | -- | -- |
| 439.47 | 0.976 | 5.89 | -5.82 | -- | 2 | -- | -- | -1.39 | -- | 23.03 | 7115 | -- | -- |
| 1161.44 | 1.59 | 5.55 | -- | 0.86 | 0.828 | -- | -- | -0.0107 | 6.99 | 30.19 | 1299 | -- | -- |
| 603.13 | 1.15 | 5.75 | -4.9 | -- | -- | -- | -- | -0.757 | -- | -- | -- | -- | -- |
| 1196.22 | 1.62 | 5.61 | -- | 0.868 | -- | -- | -- | -0.228 | 6.85 | -- | -- | -- | -- |
| 1198.54 | 1.61 | 5.64 | -- | -- | 1.04 | -- | -- | -0.3 | -- | 28.94 | 7272 | -- | -- |
| 1235.73 | 1.64 | 5.62 | -- | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 5 | 363.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 37 | 364.90 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 51 | 365.34 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 55 | 365.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 56 | 365.39 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 62 | 365.46 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 65 | 365.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 70 | 365.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 7 | 21 |
| 79 | 365.70 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 124 | 367.91 | wind | 7 | 43200 | > th | dose dependent | sin | 23 | NA |
| 146 | 368.31 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 274 | 370.19 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 293 | 370.64 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 303 | 370.73 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 306 | 370.78 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 312 | 370.84 | wind | 5 | 43200 | > th | dose dependent | sin | 15 | NA |
| 313 | 370.86 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 320 | 370.97 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 372 | 371.43 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 395 | 371.66 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 403 | 371.70 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 426 | 371.93 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 427 | 371.93 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 439 | 372.01 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 443 | 372.02 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 479 | 372.37 | wind | 5 | 43200 | > th | dose independent | sin | 14 | NA |
| 494 | 372.50 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 496 | 372.51 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 498 | 372.52 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 505 | 372.56 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 512 | 372.62 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 529 | 372.73 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 548 | 372.85 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 558 | 372.91 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 567 | 372.96 | wind | 5 | 43200 | < th | dose independent | sin | 14 | NA |
| 569 | 372.96 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 575 | 373.00 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 803 | 373.90 | wind | 9 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 805 | 373.91 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 882 | 374.22 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 902 | 374.34 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 935 | 374.52 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 1 |