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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0309500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.8 (0.0305) R2 : 0.184
β1 : 0.267 (0.112) R2dD : 0.0107 R2D : 0.00403
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.91 (0.448) R2dE : 0.241 R2E : -0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 18.8 (2) R2dD*E : 0.28 R2D*E : -0.0633
γ1 : 0.00955 (0.065) R2dN8 : 5.33e-05 R2N8 : -0.000632
σ : 0.569
deviance : 149.36
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.071
memory length : 2
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 7.48

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.98 0.573 2.8 0.253 0.0396 3.73 -0.295 18.3 0.00897 21.4 5.007 2 18.7 7.27
172.24 0.611 2.79 0.202 0.0226 1.65 0.0754 -- 0.0363 5.68 3.194 2 20 4.09
149.24 0.569 2.8 0.266 0.0456 3.88 -- 18.8 0.00924 23.1 5.079 2 18.9 7.87
171.95 0.611 2.78 0.223 0.00699 1.56 -- -- 0.0436 16.5 3.083 2 20 4.17
149.36 0.569 2.8 0.267 -- 3.91 -- 18.8 0.00955 -- 5.071 2 19 7.48
180.83 0.63 2.79 0.195 0.14 -- 0.151 -- 0.00762 21.5 -- -- -- --
180.91 0.63 2.79 0.189 0.14 -- -- -- 0.00745 21.5 -- -- -- --
171.95 0.611 2.78 0.223 -- 1.56 -- -- 0.0429 -- 3.084 2 20 4.44
173.23 0.613 2.79 -- 0.0236 1.53 -- -- 0.0221 20.7 3.07 2 20 5.96
182.06 0.63 2.79 0.19 -- -- -- -- 0.00704 -- -- -- -- --
181.86 0.631 2.8 -- 0.14 -- -- -- -0.0137 21.6 -- -- -- --
173.26 0.613 2.79 -- -- 1.53 -- -- 0.0177 -- 3.1 2 20 5.22
183.02 0.631 2.79 -- -- -- -- -- -0.0141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.13 wind 5.0 10 > th dose dependent rect. 18 7
17 156.67 wind 3.0 90 > th dose dependent rect. 23 1
21 157.23 wind 3.0 10 > th dose dependent rect. 24 1
30 158.21 wind 5.0 90 > th dose independent rect. 23 1
43 160.43 wind 3.0 10 > th dose independent rect. 23 2
68 160.99 wind 5.0 30 > th dose independent rect. 22 8
76 161.12 wind 5.0 270 > th dose dependent rect. 19 5
81 161.39 wind 5.0 270 > th dose dependent rect. 19 2
86 161.54 precipitation 0.1 1440 > th dose independent rect. 22 1
87 161.54 precipitation 0.1 1440 > th dose dependent rect. 22 1
107 162.24 wind 5.0 270 > th dose independent rect. 19 5
121 162.60 precipitation 0.1 90 > th dose independent rect. 23 2
123 162.60 precipitation 0.1 90 > th dose dependent rect. 23 2
163 162.85 wind 5.0 10 > th dose dependent sin 10 NA
167 162.89 wind 5.0 270 > th dose independent rect. 19 2
191 163.28 wind 5.0 10 > th dose independent rect. 18 7
305 164.73 wind 5.0 10 > th dose independent sin 10 NA
356 165.41 wind 7.0 10 > th dose independent rect. 19 3
367 165.44 wind 7.0 10 > th dose independent rect. 19 1
369 165.44 wind 7.0 10 > th dose dependent rect. 19 1
374 165.46 wind 5.0 10 < th dose independent sin 10 NA
375 165.46 temperature 20.0 90 < th dose independent rect. 17 2
376 165.46 temperature 20.0 90 < th dose independent rect. 15 4
380 165.46 temperature 20.0 90 < th dose dependent rect. 17 2
381 165.46 temperature 20.0 90 < th dose dependent rect. 15 4
410 165.66 temperature 20.0 90 < th dose independent rect. 9 10
513 166.55 temperature 20.0 30 < th dose dependent rect. 9 11
683 167.79 humidity 80.0 720 < th dose independent rect. 24 1
686 167.79 humidity 80.0 720 < th dose dependent rect. 24 1
693 167.84 humidity 80.0 10 < th dose independent rect. 24 4
698 167.84 humidity 80.0 10 < th dose dependent rect. 24 4
705 167.86 humidity 80.0 30 < th dose independent rect. 23 1
713 167.86 humidity 80.0 30 < th dose dependent rect. 23 1
888 168.94 temperature 30.0 10 > th dose dependent rect. 18 16
902 169.01 wind 5.0 1440 < th dose independent rect. 19 1
925 169.11 wind 3.0 270 > th dose dependent sin 13 NA
936 169.17 humidity 80.0 10 < th dose dependent rect. 20 1