Os04g0309400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0309400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.94 | 0.373 | 10.9 | -1.37 | 0.956 | -1.04 | 0.29 | 0.255 | 0.397 | 0.585 | 24.1 | 79 | -- | -- |
| 62.76 | 0.369 | 10.9 | -1.33 | 0.959 | -1.16 | 0.331 | -- | 0.425 | 0.552 | 22.92 | 62 | -- | -- |
| 63.17 | 0.37 | 10.9 | -1.39 | 0.949 | -1.05 | -- | 0.381 | 0.404 | 0.52 | 23.67 | 79 | -- | -- |
| 63.23 | 0.37 | 10.9 | -1.34 | 0.955 | -1.17 | -- | -- | 0.428 | 0.492 | 22.92 | 64 | -- | -- |
| 104.47 | 0.476 | 10.9 | -1.45 | -- | -0.889 | -- | 0.835 | 0.383 | -- | 28.99 | 894 | -- | -- |
| 78.66 | 0.416 | 10.8 | -1.09 | 0.803 | -- | 0.35 | -- | 0.577 | 0.455 | -- | -- | -- | -- |
| 79.16 | 0.417 | 10.8 | -1.1 | 0.802 | -- | -- | -- | 0.576 | 0.354 | -- | -- | -- | -- |
| 105.24 | 0.478 | 10.9 | -1.34 | -- | -0.945 | -- | -- | 0.387 | -- | 28.8 | 912 | -- | -- |
| 105.92 | 0.482 | 10.8 | -- | 0.872 | -0.639 | -- | -- | 0.637 | 0.335 | 22.5 | 17 | -- | -- |
| 119.6 | 0.511 | 10.8 | -1.07 | -- | -- | -- | -- | 0.588 | -- | -- | -- | -- | -- |
| 110.94 | 0.493 | 10.8 | -- | 0.786 | -- | -- | -- | 0.698 | 0.281 | -- | -- | -- | -- |
| 142.13 | 0.557 | 10.8 | -- | -- | 0.593 | -- | -- | 0.807 | -- | 29.16 | 876 | -- | -- |
| 149.86 | 0.571 | 10.8 | -- | -- | -- | -- | -- | 0.707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.10 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 2 | 60.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 4 | 60.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 6 | 60.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 8 | 60.52 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 10 |
| 20 | 60.80 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 38 | 61.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 46 | 61.21 | temperature | 10 | 90 | > th | dose dependent | sin | 10 | NA |
| 64 | 61.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 84 | 61.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 85 | 61.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |
| 139 | 62.12 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 10 |
| 211 | 62.55 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 10 |
| 343 | 63.05 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 387 | 63.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 407 | 63.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 415 | 63.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 442 | 63.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 21 |
| 486 | 63.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 501 | 63.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 515 | 63.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 604 | 63.86 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 651 | 63.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 659 | 63.97 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 696 | 64.06 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 709 | 64.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 718 | 64.13 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 759 | 64.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 824 | 64.37 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 921 | 64.66 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 18 |
| 933 | 64.70 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 987 | 64.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 14 |