Os04g0309100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3).
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Os04g0309100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.5 | 0.327 | 3.26 | 0.296 | 0.215 | 0.616 | 0.416 | -0.142 | 0.211 | 16.5 | 36.1 | 340 | -- | -- |
| 48.5 | 0.324 | 3.26 | 0.296 | 0.214 | 0.613 | 0.364 | -- | 0.212 | 16.5 | 35.7 | 340 | -- | -- |
| 48.78 | 0.325 | 3.26 | 0.302 | 0.207 | 0.614 | -- | 0.105 | 0.212 | 16.3 | 35.1 | 343 | -- | -- |
| 48.78 | 0.325 | 3.26 | 0.3 | 0.216 | 0.599 | -- | -- | 0.218 | 16 | 35.11 | 343 | -- | -- |
| 50.22 | 0.33 | 3.26 | 0.285 | -- | 0.785 | -- | 0.149 | 0.195 | -- | 35.11 | 365 | -- | -- |
| 53.22 | 0.342 | 3.25 | 0.315 | 0.45 | -- | 0.288 | -- | 0.265 | 15.9 | -- | -- | -- | -- |
| 53.45 | 0.342 | 3.25 | 0.319 | 0.45 | -- | -- | -- | 0.266 | 15.8 | -- | -- | -- | -- |
| 50.25 | 0.33 | 3.26 | 0.279 | -- | 0.785 | -- | -- | 0.194 | -- | 35.1 | 365 | -- | -- |
| 50.81 | 0.332 | 3.26 | -- | 0.188 | 0.668 | -- | -- | 0.188 | 16.1 | 31.7 | 340 | -- | -- |
| 64.63 | 0.376 | 3.25 | 0.3 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 56.13 | 0.35 | 3.26 | -- | 0.444 | -- | -- | -- | 0.231 | 15.8 | -- | -- | -- | -- |
| 51.97 | 0.336 | 3.27 | -- | -- | 0.803 | -- | -- | 0.165 | -- | 32.11 | 348 | -- | -- |
| 67.01 | 0.382 | 3.25 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.58 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 5 | 45.66 | radiation | 30.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 7 | 45.79 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 14 | 18 |
| 10 | 45.82 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 14 | 2 |
| 28 | 45.84 | radiation | 30.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 29 | 45.85 | radiation | 40.0 | 90 | > th | dose independent | rect. | 14 | 2 |
| 48 | 45.86 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 52 | 45.90 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 53 | 45.91 | wind | 5.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 55 | 45.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 60 | 45.92 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 83 | 45.94 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 89 | 45.96 | humidity | 70.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 95 | 45.97 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 96 | 45.98 | wind | 7.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 97 | 45.98 | temperature | 20.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 98 | 45.98 | humidity | 90.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 99 | 45.98 | wind | 1.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 107 | 46.00 | radiation | 30.0 | 10 | > th | dose independent | sin | 13 | NA |
| 110 | 46.00 | temperature | 10.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 112 | 46.00 | humidity | 60.0 | 30 | > th | dose independent | rect. | 14 | 1 |
| 114 | 46.00 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 117 | 46.00 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 1 |
| 118 | 46.00 | temperature | 10.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 120 | 46.00 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 124 | 46.02 | radiation | 40.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 127 | 46.04 | temperature | 30.0 | 30 | < th | dose independent | rect. | 14 | 1 |
| 128 | 46.04 | wind | 9.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 130 | 46.04 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 14 | 1 |
| 148 | 46.05 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 192 | 46.25 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 15 | 23 |
| 193 | 46.25 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 237 | 46.60 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 240 | 46.62 | temperature | 30.0 | 90 | > th | dose independent | rect. | 12 | 2 |
| 260 | 46.72 | wind | 9.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 289 | 46.92 | radiation | 30.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 308 | 47.02 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 318 | 47.24 | radiation | 30.0 | 30 | < th | dose independent | sin | 13 | NA |
| 363 | 47.35 | temperature | 30.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 370 | 47.45 | humidity | 50.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 548 | 48.02 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 14 | 1 |
| 584 | 48.18 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 741 | 48.48 | temperature | 25.0 | 30 | > th | dose independent | rect. | 16 | 15 |
| 806 | 48.68 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 17 |
| 839 | 48.70 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 845 | 48.70 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 868 | 48.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 5 |
| 891 | 48.77 | temperature | 25.0 | 10 | > th | dose independent | sin | 10 | NA |
| 900 | 48.80 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 11 |
| 908 | 48.84 | radiation | 30.0 | 270 | < th | dose independent | sin | 19 | NA |
| 915 | 48.86 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 939 | 48.88 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 978 | 48.90 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 15 |