Os04g0308000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os04g0308000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.92 | 0.661 | 3.59 | 0.347 | 0.375 | -1.02 | 0.456 | -1.91 | -0.0397 | 4.62 | 1015 | 5115 | -- | -- |
| 202.22 | 0.662 | 3.63 | 0.185 | 0.376 | -0.631 | 0.525 | -- | -0.0876 | 4.44 | 1014 | 5112 | -- | -- |
| 198.41 | 0.656 | 3.58 | 0.324 | 0.381 | -1.42 | -- | -2.76 | -0.0376 | 4.39 | 1015 | 4971 | -- | -- |
| 202.84 | 0.663 | 3.63 | 0.165 | 0.372 | -0.614 | -- | -- | -0.089 | 4.42 | 1013 | 5108 | -- | -- |
| 205.98 | 0.668 | 3.58 | 0.331 | -- | -1.65 | -- | -3.19 | -0.0323 | -- | 1016 | 4850 | -- | -- |
| 211.56 | 0.682 | 3.6 | 0.297 | 0.382 | -- | 0.434 | -- | 0.0103 | 4.65 | -- | -- | -- | -- |
| 212.03 | 0.682 | 3.6 | 0.295 | 0.384 | -- | -- | -- | 0.00797 | 4.45 | -- | -- | -- | -- |
| 210.24 | 0.675 | 3.63 | 0.175 | -- | -0.632 | -- | -- | -0.0792 | -- | 1013 | 5096 | -- | -- |
| 203.43 | 0.664 | 3.63 | -- | 0.372 | -0.649 | -- | -- | -0.112 | 4.42 | 1013 | 5250 | -- | -- |
| 219.92 | 0.693 | 3.61 | 0.31 | -- | -- | -- | -- | 0.0181 | -- | -- | -- | -- | -- |
| 214.32 | 0.685 | 3.61 | -- | 0.389 | -- | -- | -- | -0.0248 | 4.43 | -- | -- | -- | -- |
| 210.91 | 0.676 | 3.64 | -- | -- | -0.669 | -- | -- | -0.107 | -- | 1013 | 5251 | -- | -- |
| 222.45 | 0.696 | 3.61 | -- | -- | -- | -- | -- | -0.0162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.38 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 2 | 197.61 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 3 | 197.66 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 11 | 3 |
| 4 | 197.71 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 5 | 197.87 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 6 | 197.87 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 7 | 197.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 8 | 197.89 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 9 | 197.89 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 18 | 198.09 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 23 | 198.16 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 24 | 198.16 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 27 | 198.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 36 | 198.30 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 65 | 198.38 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 8 |
| 69 | 198.39 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 6 |
| 72 | 198.40 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 73 | 198.40 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 76 | 198.43 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 86 | 198.46 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 91 | 198.46 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 108 | 198.50 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 152 | 198.54 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 156 | 198.55 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 167 | 198.56 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 209 | 198.63 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 235 | 198.66 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 276 | 198.73 | wind | 1.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 288 | 198.78 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 290 | 198.79 | wind | 1.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 302 | 198.83 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 384 | 199.01 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 387 | 199.02 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 389 | 199.03 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 401 | 199.05 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 403 | 199.06 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 426 | 199.13 | temperature | 25.0 | 10 | > th | dose independent | rect. | 21 | 1 |
| 436 | 199.14 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 438 | 199.14 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 444 | 199.15 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 445 | 199.15 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 22 | 6 |
| 453 | 199.16 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 473 | 199.18 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 492 | 199.19 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 497 | 199.19 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 515 | 199.20 | humidity | 50.0 | 4320 | < th | dose independent | sin | 15 | NA |
| 538 | 199.21 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 558 | 199.21 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 6 | 18 |
| 603 | 199.22 | atmosphere | 1015.0 | 14400 | > th | dose dependent | no | NA | NA |
| 647 | 199.23 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 17 | 22 |
| 707 | 199.26 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 976 | 199.34 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 991 | 199.35 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 10 | 1 |