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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0304400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MADS-box protein AGL16-II.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0314) R2 : 0.00023
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0214 (0.0662) R2dN8 : 0.000296 R2N8 : 0.00023
σ : 0.592
deviance : 160.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.69 0.581 3.03 -0.228 0.146 -0.129 -0.0585 1.75 -0.0686 9.28 9.958 1443 -- --
157.4 0.584 3.04 -0.172 0.156 -0.201 -0.147 -- -0.0508 9.13 9.941 2050 -- --
152.48 0.575 3.02 -0.22 0.145 -0.12 -- 1.77 -0.0695 9.18 7.706 1469 -- --
157.19 0.584 3.04 -0.174 0.152 -0.21 -- -- -0.0486 9.19 9.94 4304 -- --
153.39 0.577 3.03 -0.258 -- -0.192 -- 1.92 -0.0823 -- 7.69 1471 -- --
158.24 0.59 3.04 -0.196 0.158 -- -0.0757 -- -0.0437 9.73 -- -- -- --
158.26 0.589 3.04 -0.199 0.159 -- -- -- -0.0439 9.64 -- -- -- --
158.68 0.587 3.04 -0.17 -- -0.241 -- -- -0.0528 -- 9.96 4336 -- --
157.36 0.584 3.04 -- 0.195 -0.314 -- -- -0.0519 9.07 9.554 4274 -- --
159.75 0.591 3.04 -0.2 -- -- -- -- -0.0436 -- -- -- -- --
159.3 0.59 3.03 -- 0.159 -- -- -- -0.0218 9.74 -- -- -- --
158.73 0.587 3.05 -- -- -0.355 -- -- -0.0714 -- 9.96 4329 -- --
160.81 0.592 3.04 -- -- -- -- -- -0.0214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.25 wind 3.0 270 > th dose dependent rect. 2 1
2 149.28 wind 3.0 270 > th dose independent rect. 2 1
3 149.32 radiation 10.0 30 > th dose independent rect. 17 15
6 149.45 humidity 90.0 10 < th dose independent rect. 4 4
8 149.69 radiation 10.0 10 > th dose independent rect. 6 1
34 149.69 radiation 10.0 10 > th dose dependent rect. 6 1
73 150.05 wind 5.0 270 > th dose dependent rect. 2 3
75 150.05 temperature 30.0 30 < th dose dependent rect. 15 8
85 150.29 humidity 70.0 10 < th dose independent rect. 7 1
145 150.29 humidity 70.0 10 < th dose dependent rect. 7 1
206 150.35 atmosphere 1005.0 270 > th dose independent rect. 1 7
209 150.44 humidity 90.0 10 < th dose independent rect. 2 6
212 150.50 wind 5.0 270 > th dose independent rect. 2 3
215 150.61 atmosphere 1000.0 10 < th dose independent rect. 7 1
222 150.61 atmosphere 1000.0 10 < th dose dependent rect. 7 1
239 150.69 wind 1.0 10 < th dose dependent rect. 7 1
240 150.70 temperature 10.0 10 > th dose dependent rect. 8 12
242 150.72 wind 1.0 10 < th dose independent rect. 7 1
243 150.75 radiation 1.0 90 < th dose independent rect. 14 1
244 150.75 radiation 1.0 90 < th dose dependent rect. 14 1
245 150.77 atmosphere 1005.0 270 > th dose independent rect. 3 4
247 150.81 atmosphere 1005.0 10 > th dose independent rect. 15 17
269 151.08 temperature 20.0 90 < th dose dependent rect. 12 4
272 151.13 temperature 20.0 10 < th dose dependent rect. 12 5
275 151.20 precipitation 0.1 720 < th dose independent rect. 19 8
276 151.20 precipitation 0.1 720 < th dose dependent rect. 19 8
277 151.23 atmosphere 1005.0 10 > th dose independent rect. 15 19
279 151.32 wind 1.0 10 < th dose independent rect. 6 3
288 151.43 atmosphere 1005.0 30 > th dose independent rect. 20 12
290 151.44 temperature 30.0 10 < th dose dependent rect. 12 11
292 151.49 humidity 90.0 10 < th dose dependent rect. 3 5
294 151.52 temperature 30.0 90 < th dose dependent rect. 20 1
297 151.61 atmosphere 1005.0 10 > th dose independent rect. 20 2
302 151.64 radiation 10.0 30 < th dose independent rect. 22 8
306 151.68 radiation 10.0 90 < th dose dependent rect. 22 15
311 151.71 atmosphere 1005.0 270 > th dose dependent rect. 1 6
313 151.74 humidity 70.0 90 > th dose independent rect. 14 8
316 151.76 radiation 1.0 90 < th dose independent rect. 22 10
319 151.79 temperature 25.0 30 < th dose dependent rect. 15 1
330 151.81 atmosphere 995.0 10 > th dose dependent rect. 6 16
332 151.83 atmosphere 1005.0 10 > th dose independent rect. 4 4
334 151.84 atmosphere 1005.0 10 > th dose independent rect. 4 6
343 151.87 precipitation 0.1 720 < th dose independent rect. 15 16
344 151.87 precipitation 0.1 720 < th dose dependent rect. 15 16
348 151.88 temperature 10.0 720 > th dose dependent rect. 8 1
349 151.89 atmosphere 1005.0 10 > th dose independent rect. 6 2
351 151.89 precipitation 0.1 90 < th dose independent rect. 8 11
352 151.89 precipitation 0.1 90 < th dose dependent rect. 8 11
356 151.91 radiation 10.0 30 < th dose independent rect. 22 15
359 151.92 temperature 25.0 30 > th dose independent rect. 8 12
373 151.96 atmosphere 1000.0 10 > th dose dependent rect. 15 8
385 152.01 temperature 20.0 90 < th dose independent rect. 14 2
388 152.02 atmosphere 1005.0 10 > th dose independent rect. 2 8
395 152.03 atmosphere 1005.0 30 > th dose dependent rect. 2 6
406 152.08 humidity 70.0 90 > th dose dependent rect. 20 1
413 152.10 atmosphere 1000.0 10 > th dose dependent rect. 20 2
428 152.16 wind 7.0 90 < th dose independent rect. 19 13
429 152.16 atmosphere 1000.0 90 > th dose dependent rect. 19 3
444 152.20 temperature 25.0 10 > th dose independent rect. 20 12
445 152.20 wind 7.0 90 < th dose dependent rect. 20 1
447 152.20 temperature 20.0 10 < th dose dependent rect. 10 7
449 152.20 radiation 10.0 90 < th dose dependent rect. 22 8
451 152.21 temperature 20.0 90 < th dose independent rect. 12 4
453 152.21 temperature 25.0 90 < th dose independent rect. 5 17
456 152.21 radiation 10.0 1440 < th dose independent rect. 9 22
459 152.22 atmosphere 1000.0 90 > th dose dependent rect. 20 1
464 152.22 temperature 10.0 30 > th dose dependent rect. 8 22
465 152.24 radiation 10.0 1440 < th dose independent rect. 9 4
475 152.24 humidity 50.0 10 > th dose dependent rect. 22 8
492 152.27 atmosphere 1005.0 90 > th dose dependent rect. 6 1
494 152.27 temperature 30.0 90 < th dose dependent rect. 5 17
498 152.29 wind 7.0 10 < th dose independent rect. 20 2
506 152.30 radiation 1.0 1440 < th dose dependent rect. 21 1
532 152.35 temperature 10.0 90 > th dose independent rect. 8 11
533 152.35 atmosphere 1015.0 90 < th dose independent rect. 8 11
534 152.35 temperature 10.0 90 > th dose independent rect. 19 13
535 152.35 temperature 30.0 90 < th dose independent rect. 19 13
536 152.35 humidity 50.0 90 > th dose independent rect. 19 13
538 152.35 atmosphere 995.0 90 > th dose independent rect. 19 13
542 152.36 wind 7.0 90 < th dose independent rect. 20 1
556 152.38 atmosphere 1005.0 10 > th dose dependent rect. 6 1
559 152.39 radiation 40.0 90 < th dose independent rect. 19 13
562 152.40 precipitation 0.1 10 < th dose independent rect. 6 16
567 152.40 precipitation 0.1 10 < th dose dependent rect. 6 16
571 152.41 humidity 60.0 10 > th dose dependent rect. 15 8
576 152.42 atmosphere 1005.0 30 > th dose dependent rect. 4 4
578 152.42 temperature 30.0 10 < th dose dependent rect. 6 17
585 152.44 radiation 10.0 1440 < th dose independent rect. 9 8
587 152.44 temperature 25.0 270 < th dose independent rect. 3 17
594 152.44 atmosphere 995.0 10 > th dose dependent rect. 2 21
595 152.45 atmosphere 1005.0 270 < th dose independent rect. 2 4
598 152.45 precipitation 0.1 90 < th dose independent rect. 19 13
600 152.45 temperature 30.0 90 < th dose dependent rect. 19 3
602 152.45 precipitation 0.1 90 < th dose dependent rect. 19 13
606 152.46 radiation 10.0 1440 < th dose dependent rect. 18 21
608 152.47 temperature 25.0 30 > th dose independent rect. 4 4
614 152.47 temperature 20.0 10 > th dose dependent rect. 2 6
621 152.48 radiation 10.0 1440 < th dose dependent rect. 24 15
623 152.49 atmosphere 995.0 30 > th dose independent rect. 6 16
630 152.50 atmosphere 1005.0 270 < th dose independent rect. 3 2
631 152.50 wind 1.0 30 > th dose independent rect. 6 16
633 152.50 atmosphere 1010.0 10 < th dose independent rect. 23 16
634 152.50 humidity 50.0 10 > th dose dependent rect. 20 2
657 152.51 wind 9.0 30 < th dose independent rect. 6 16
661 152.51 radiation 10.0 1440 < th dose dependent rect. 4 11
668 152.51 atmosphere 995.0 90 > th dose dependent rect. 2 20
678 152.53 radiation 10.0 1440 < th dose independent rect. 24 17
680 152.53 radiation 10.0 1440 < th dose independent rect. 18 23
686 152.54 precipitation 0.1 90 < th dose independent rect. 20 1
690 152.54 temperature 10.0 30 > th dose independent rect. 22 8
691 152.54 temperature 30.0 30 < th dose independent rect. 22 8
692 152.54 humidity 50.0 30 > th dose independent rect. 22 8
695 152.54 atmosphere 995.0 30 > th dose independent rect. 22 8
699 152.54 radiation 10.0 1440 < th dose independent rect. 4 13
702 152.54 temperature 10.0 30 > th dose independent rect. 6 16
704 152.54 atmosphere 1015.0 30 < th dose independent rect. 6 16
710 152.54 precipitation 0.1 90 < th dose dependent rect. 20 1
711 152.54 temperature 30.0 10 < th dose dependent rect. 20 2
714 152.55 wind 9.0 30 < th dose independent rect. 22 8
715 152.55 temperature 10.0 1440 > th dose independent rect. 23 8
718 152.55 temperature 30.0 1440 < th dose independent rect. 23 8
722 152.55 humidity 50.0 1440 > th dose independent rect. 23 8
727 152.55 atmosphere 995.0 1440 > th dose independent rect. 23 8
728 152.55 radiation 40.0 1440 < th dose independent rect. 23 8
732 152.55 temperature 10.0 1440 > th dose independent rect. 7 16
761 152.57 precipitation 0.1 30 < th dose independent rect. 22 8
762 152.57 atmosphere 1005.0 270 > th dose independent rect. 17 15
764 152.57 humidity 50.0 10 > th dose independent rect. 22 22
766 152.57 precipitation 0.1 30 < th dose dependent rect. 22 8
777 152.58 precipitation 0.1 90 < th dose independent rect. 21 23
780 152.58 precipitation 0.1 90 < th dose dependent rect. 21 23
784 152.59 radiation 10.0 1440 < th dose independent rect. 9 17
791 152.60 radiation 10.0 1440 < th dose independent sin 0 NA
792 152.60 temperature 10.0 90 > th dose independent rect. 20 1
794 152.60 temperature 30.0 90 < th dose independent rect. 20 1
795 152.60 humidity 50.0 90 > th dose independent rect. 20 1
798 152.60 atmosphere 995.0 90 > th dose independent rect. 20 1
799 152.60 atmosphere 1010.0 90 < th dose independent rect. 20 1
801 152.60 radiation 1.0 90 < th dose independent rect. 20 1
809 152.60 radiation 10.0 1440 < th dose independent rect. 9 10
815 152.60 temperature 10.0 90 > th dose independent rect. 21 23
816 152.60 radiation 1.0 90 < th dose dependent rect. 20 1
825 152.61 wind 1.0 10 > th dose independent rect. 20 2
834 152.61 precipitation 0.1 720 < th dose independent rect. 7 17
837 152.61 radiation 10.0 720 < th dose dependent rect. 22 8
838 152.61 precipitation 0.1 720 < th dose dependent rect. 7 17
847 152.63 wind 9.0 90 < th dose independent rect. 8 11
889 152.68 wind 1.0 90 > th dose independent rect. 20 1
892 152.68 temperature 10.0 1440 > th dose independent rect. 9 11
895 152.68 temperature 10.0 1440 > th dose independent rect. 20 13
898 152.68 humidity 50.0 1440 > th dose independent rect. 20 13
900 152.68 atmosphere 995.0 1440 > th dose independent rect. 20 13
906 152.68 temperature 20.0 30 > th dose dependent rect. 6 2
920 152.69 atmosphere 1010.0 10 < th dose independent rect. 22 22
921 152.69 wind 9.0 10 < th dose dependent rect. 20 2
937 152.71 temperature 25.0 270 < th dose independent rect. 3 13
948 152.71 radiation 10.0 1440 < th dose independent rect. 16 23
951 152.71 precipitation 0.1 720 < th dose independent rect. 9 23
954 152.71 radiation 1.0 720 < th dose dependent rect. 18 9
959 152.71 precipitation 0.1 720 < th dose dependent rect. 9 23
960 152.72 radiation 10.0 1440 < th dose independent no NA NA
984 152.72 radiation 10.0 1440 < th dose independent rect. 4 21