Os04g0304200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Phototropin).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0304200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Nonphototropic hypocotyl protein 1 (EC 2.7.1.37) (Phototropin).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.34 | 0.316 | 13.3 | -1.56 | 0.915 | 0.868 | 0.685 | -0.711 | -0.0208 | 8.08 | 14.79 | 802 | -- | -- |
| 45.65 | 0.315 | 13.3 | -1.44 | 0.896 | 0.861 | 0.822 | -- | 0.0152 | 8.16 | 13.37 | 857 | -- | -- |
| 46.5 | 0.318 | 13.4 | -1.65 | 0.914 | 0.845 | -- | -1.24 | -0.053 | 8.05 | 15.6 | 810 | -- | -- |
| 47.63 | 0.321 | 13.3 | -1.41 | 0.874 | 0.831 | -- | -- | 0.0186 | 8.19 | 14.8 | 897 | -- | -- |
| 78.93 | 0.414 | 13.4 | -1.53 | -- | 0.651 | -- | -0.229 | 0.0152 | -- | -1.246 | 4356 | -- | -- |
| 55.66 | 0.35 | 13.3 | -1.2 | 0.741 | -- | 0.741 | -- | 0.151 | 7.8 | -- | -- | -- | -- |
| 57.24 | 0.354 | 13.3 | -1.18 | 0.741 | -- | -- | -- | 0.15 | 7.75 | -- | -- | -- | -- |
| 78.69 | 0.413 | 13.3 | -1.44 | -- | 0.634 | -- | -- | 0.0301 | -- | 14.62 | 2919 | -- | -- |
| 93.04 | 0.452 | 13.3 | -- | 0.749 | 0.29 | -- | -- | 0.241 | 7.38 | 17.43 | 856 | -- | -- |
| 86.94 | 0.436 | 13.3 | -1.18 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 94.22 | 0.454 | 13.3 | -- | 0.733 | -- | -- | -- | 0.281 | 7.87 | -- | -- | -- | -- |
| 102.78 | 0.472 | 13.2 | -- | -- | -0.699 | -- | -- | 0.522 | -- | 17.04 | 46820 | -- | -- |
| 123.37 | 0.518 | 13.3 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 2 | 42.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 3 | 42.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 6 | 42.27 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 11 | 42.42 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 22 | 42.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 47 | 43.14 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 60 | 43.40 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 62 | 43.49 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 78 | 43.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 88 | 43.87 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 113 | 44.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 143 | 44.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 157 | 44.56 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 171 | 44.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 179 | 44.66 | temperature | 25 | 10 | < th | dose dependent | sin | 2 | NA |
| 194 | 44.71 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 198 | 44.74 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 237 | 44.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 305 | 45.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 313 | 45.11 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 325 | 45.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 344 | 45.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 353 | 45.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 356 | 45.20 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 357 | 45.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 376 | 45.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 402 | 45.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 435 | 45.32 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 437 | 45.32 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 438 | 45.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 522 | 45.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 567 | 45.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 619 | 45.51 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 9 |
| 636 | 45.52 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 651 | 45.53 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 662 | 45.54 | temperature | 10 | 10 | > th | dose dependent | sin | 5 | NA |
| 681 | 45.55 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 733 | 45.59 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |
| 735 | 45.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 751 | 45.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 752 | 45.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 762 | 45.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 791 | 45.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 793 | 45.63 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 795 | 45.63 | humidity | 90 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 808 | 45.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 809 | 45.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 829 | 45.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 875 | 45.67 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 896 | 45.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 902 | 45.69 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 954 | 45.71 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 18 |