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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0303500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0322) R2 : 0.435
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.855 (0.0837) R2dC : 0.135 R2C : 0.0591
β3 : -1.21 (0.148) R2dE : 0.0986 R2E : 0.094
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.732 (0.0716) R2dN8 : 0.192 R2N8 : 0.241
σ : 0.596
deviance : 163.65
__
_____
C
peak time of C : 4.64
E
wheather : temperature
threshold : 25.1
memory length : 401
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.09 0.598 3.79 0.171 0.846 -1.24 -0.481 -0.626 0.767 4.63 24.9 411 -- --
162.54 0.594 3.81 0.0699 0.848 -1.18 -0.605 -- 0.744 4.6 25 399 -- --
162.66 0.594 3.79 0.199 0.849 -1.24 -- -0.725 0.771 4.61 24.9 399 -- --
163.54 0.596 3.81 0.0694 0.851 -1.19 -- -- 0.743 4.64 25.1 400 -- --
187.04 0.637 3.81 0.141 -- -1.36 -- -0.758 0.729 -- 26.03 1219 -- --
182.88 0.634 3.76 0.369 0.717 -- -0.583 -- 0.982 4.32 -- -- -- --
183.82 0.635 3.75 0.375 0.713 -- -- -- 0.986 4.33 -- -- -- --
187.23 0.637 3.82 0.0184 -- -1.27 -- -- 0.716 -- 26.6 1216 -- --
163.65 0.596 3.81 -- 0.855 -1.21 -- -- 0.732 4.64 25.1 401 -- --
211.2 0.679 3.76 0.403 -- -- -- -- 1 -- -- -- -- --
187.52 0.641 3.76 -- 0.72 -- -- -- 0.944 4.32 -- -- -- --
187.24 0.637 3.82 -- -- -1.28 -- -- 0.714 -- 26.6 1210 -- --
215.48 0.685 3.77 -- -- -- -- -- 0.96 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.85 radiation 1 4320 < th dose dependent rect. 18 12
2 160.34 temperature 25 270 < th dose dependent rect. 19 15
3 160.56 radiation 1 4320 < th dose dependent rect. 24 6
4 160.57 temperature 25 720 < th dose dependent rect. 19 7
6 160.60 radiation 1 4320 < th dose dependent rect. 4 2
7 160.61 temperature 25 720 < th dose dependent rect. 18 9
15 160.67 humidity 90 14400 > th dose dependent rect. 5 1
28 161.10 temperature 25 720 < th dose dependent sin 14 NA
42 161.40 humidity 90 14400 < th dose independent rect. 24 1
50 161.55 radiation 1 43200 < th dose independent rect. 18 11
62 161.76 humidity 90 14400 < th dose independent rect. 23 4
64 161.77 humidity 90 14400 > th dose independent rect. 23 4
68 161.80 wind 1 14400 < th dose dependent rect. 20 4
81 161.94 radiation 1 4320 < th dose dependent rect. 18 2
82 161.95 radiation 1 4320 < th dose independent rect. 18 12
85 161.98 humidity 90 14400 > th dose independent rect. 24 1
86 161.98 radiation 1 43200 < th dose independent rect. 18 2
91 162.00 radiation 1 43200 < th dose independent rect. 18 7
96 162.00 temperature 25 270 < th dose dependent rect. 19 22
98 162.01 temperature 30 10 < th dose dependent rect. 23 13
101 162.02 radiation 1 4320 > th dose independent rect. 18 12
112 162.09 radiation 1 4320 < th dose dependent rect. 18 7
125 162.17 radiation 40 43200 < th dose dependent rect. 18 11
133 162.25 humidity 90 14400 > th dose dependent rect. 24 1
140 162.30 humidity 90 14400 > th dose dependent rect. 4 3
141 162.30 temperature 10 720 > th dose dependent rect. 19 8
144 162.32 wind 1 14400 > th dose independent rect. 21 3
146 162.33 radiation 40 43200 < th dose dependent rect. 18 2
158 162.42 radiation 1 43200 > th dose independent rect. 18 11
160 162.42 radiation 1 4320 < th dose dependent rect. 18 17
161 162.43 temperature 20 270 > th dose dependent sin 10 NA
164 162.45 humidity 90 14400 > th dose dependent rect. 23 7
168 162.47 temperature 25 270 < th dose dependent sin 10 NA
180 162.50 temperature 25 720 < th dose dependent rect. 9 18
189 162.53 radiation 10 43200 < th dose dependent rect. 18 9
194 162.54 radiation 10 43200 < th dose dependent rect. 18 7
281 162.84 temperature 25 270 < th dose dependent rect. 6 23
283 162.87 radiation 1 43200 < th dose dependent rect. 24 5
299 162.94 radiation 1 43200 > th dose independent rect. 18 1
334 163.03 radiation 1 43200 < th dose dependent rect. 4 1
337 163.04 wind 1 14400 < th dose independent rect. 21 3
338 163.04 radiation 10 4320 < th dose independent rect. 16 15
343 163.07 temperature 25 1440 < th dose dependent rect. 2 9
350 163.10 radiation 1 4320 < th dose independent rect. 24 6
351 163.10 temperature 25 1440 < th dose dependent rect. 2 1
357 163.12 temperature 15 1440 > th dose dependent rect. 2 1
360 163.13 radiation 1 4320 > th dose independent rect. 5 1
361 163.13 radiation 1 4320 < th dose independent rect. 4 2
363 163.13 temperature 20 270 > th dose dependent rect. 19 14
405 163.23 temperature 25 1440 < th dose dependent sin 5 NA
406 163.23 temperature 25 270 < th dose dependent no NA NA
412 163.26 temperature 15 1440 > th dose dependent rect. 5 1
434 163.29 temperature 25 1440 < th dose dependent rect. 23 12
444 163.31 temperature 30 1440 < th dose dependent rect. 5 1
453 163.32 temperature 25 1440 < th dose dependent rect. 23 17
468 163.35 radiation 1 4320 < th dose dependent sin 10 NA
518 163.41 radiation 1 14400 < th dose dependent rect. 18 22
553 163.46 temperature 25 270 < th dose dependent rect. 2 23
557 163.48 temperature 10 10 > th dose dependent sin 8 NA
575 163.51 temperature 15 1440 > th dose dependent rect. 2 5
580 163.52 humidity 90 14400 > th dose independent rect. 23 7
597 163.54 radiation 10 4320 > th dose independent rect. 16 16
630 163.60 humidity 90 43200 > th dose independent rect. 5 1
641 163.60 temperature 25 1440 < th dose dependent rect. 14 21
725 163.71 temperature 25 1440 < th dose dependent rect. 2 23
726 163.72 radiation 10 4320 < th dose independent rect. 16 2
747 163.74 radiation 10 4320 < th dose independent rect. 16 4
748 163.74 temperature 25 1440 < th dose dependent no NA NA
772 163.76 radiation 10 4320 < th dose independent rect. 16 9
859 163.83 radiation 1 14400 < th dose dependent rect. 10 21
897 163.88 radiation 1 14400 < th dose dependent rect. 4 8
916 163.90 radiation 20 4320 < th dose dependent rect. 18 11
952 163.93 temperature 30 10 < th dose dependent sin 8 NA