Os04g0303100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0303100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Resistance protein candidate (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 336.48 | 0.862 | 3.14 | 0.424 | 0.326 | 1.45 | 0.497 | 4.99 | 0.0666 | 23.2 | 95.02 | 66 | 2.08 | 7.93 |
| 355.45 | 0.878 | 3.14 | 0.359 | 0.415 | 1.61 | -0.186 | -- | 0.055 | 21.6 | 97.9 | 69 | 2.43 | 7.62 |
| 337.44 | 0.856 | 3.14 | 0.414 | 0.33 | 1.45 | -- | 4.64 | 0.0649 | 23 | 95.49 | 65 | 2.1 | 7.93 |
| 355.45 | 0.878 | 3.14 | 0.408 | 0.349 | 1.51 | -- | -- | 0.0663 | 22.4 | 96.58 | 65 | 2.05 | 8.03 |
| 343.55 | 0.863 | 3.15 | 0.44 | -- | 1.29 | -- | 5.06 | 0.0631 | -- | 95 | 60 | 2.07 | 8.03 |
| 374.3 | 0.907 | 3.12 | 0.386 | 0.21 | -- | 0.824 | -- | 0.1 | 5.04 | -- | -- | -- | -- |
| 375.58 | 0.908 | 3.12 | 0.383 | 0.228 | -- | -- | -- | 0.0956 | 3.57 | -- | -- | -- | -- |
| 358.19 | 0.881 | 3.12 | 0.347 | -- | 2.08 | -- | -- | 0.129 | -- | 79.58 | 57 | 2.02 | 7.98 |
| 359.45 | 0.883 | 3.16 | -- | 0.382 | 1.52 | -- | -- | 0.00404 | 21.9 | 97.97 | 62 | 2 | 8.09 |
| 378.47 | 0.909 | 3.12 | 0.393 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 379.45 | 0.911 | 3.13 | -- | 0.236 | -- | -- | -- | 0.0529 | 3.56 | -- | -- | -- | -- |
| 361.89 | 0.886 | 3.12 | -- | -- | 2.21 | -- | -- | 0.096 | -- | 79.37 | 57 | 2.04 | 7.99 |
| 382.55 | 0.913 | 3.13 | -- | -- | -- | -- | -- | 0.058 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 338.94 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 2 | 8 |
| 13 | 341.91 | humidity | 80.0 | 90 | < th | dose independent | rect. | 2 | 8 |
| 15 | 341.98 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 38 | 344.40 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 21 | 13 |
| 52 | 344.81 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 7 | 3 |
| 124 | 346.89 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 201 | 347.99 | humidity | 80.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 213 | 348.22 | humidity | 80.0 | 90 | < th | dose independent | rect. | 7 | 3 |
| 221 | 348.42 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 258 | 348.94 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 10 | 23 |
| 283 | 349.03 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 360 | 349.68 | radiation | 40.0 | 10 | < th | dose independent | sin | 11 | NA |
| 362 | 349.72 | radiation | 40.0 | 10 | > th | dose independent | sin | 11 | NA |
| 390 | 350.12 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 392 | 350.29 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 395 | 350.44 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 396 | 350.44 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 398 | 350.55 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 399 | 350.57 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 401 | 350.59 | wind | 1.0 | 90 | > th | dose dependent | rect. | 1 | 9 |
| 402 | 350.63 | humidity | 60.0 | 90 | < th | dose independent | rect. | 9 | 1 |
| 429 | 350.65 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 23 |
| 430 | 350.65 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 23 |
| 434 | 350.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 435 | 350.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 436 | 350.76 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 5 |
| 482 | 351.40 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 485 | 351.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 486 | 351.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 511 | 351.63 | wind | 3.0 | 90 | > th | dose independent | rect. | 2 | 8 |
| 558 | 351.92 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 560 | 351.95 | temperature | 20.0 | 30 | < th | dose independent | rect. | 12 | 7 |
| 584 | 352.14 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 592 | 352.23 | radiation | 1.0 | 90 | > th | dose independent | rect. | 10 | 19 |
| 594 | 352.24 | radiation | 1.0 | 90 | > th | dose independent | rect. | 10 | 9 |
| 605 | 352.28 | temperature | 20.0 | 270 | < th | dose independent | rect. | 13 | 1 |
| 609 | 352.28 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 612 | 352.29 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 613 | 352.29 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 23 |
| 615 | 352.30 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 618 | 352.32 | wind | 3.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 622 | 352.37 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 623 | 352.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 633 | 352.43 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 646 | 352.51 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 649 | 352.51 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 652 | 352.51 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 667 | 352.60 | temperature | 20.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 668 | 352.61 | wind | 9.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 669 | 352.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 671 | 352.61 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 673 | 352.61 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 675 | 352.61 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 1 |
| 678 | 352.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 23 |
| 679 | 352.61 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 1 |
| 771 | 352.94 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 791 | 353.03 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 1 |
| 795 | 353.03 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 13 | 1 |
| 803 | 353.07 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 823 | 353.19 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 836 | 353.24 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 840 | 353.29 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 19 | 17 |
| 890 | 353.48 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 942 | 353.58 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 947 | 353.60 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 954 | 353.61 | wind | 9.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 965 | 353.64 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 19 | 17 |