Os04g0302400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0302400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.2 | 0.54 | 4.26 | 1.02 | 1.41 | 0.729 | 0.88 | 2.36 | 0.627 | 19.8 | 20.65 | 1288 | -- | -- |
| 131.92 | 0.535 | 4.3 | 0.368 | 1.31 | 0.944 | 0.801 | -- | 0.588 | 19.7 | 26.03 | 1106 | -- | -- |
| 134.05 | 0.539 | 4.27 | 1.02 | 1.4 | 0.725 | -- | 2.48 | 0.629 | 19.7 | 20.69 | 1155 | -- | -- |
| 133.83 | 0.539 | 4.3 | 0.342 | 1.29 | 0.97 | -- | -- | 0.588 | 19.6 | 25.99 | 1080 | -- | -- |
| 181.58 | 0.628 | 4.27 | 0.662 | -- | 1.66 | -- | 2.26 | 0.537 | -- | 23.88 | 678 | -- | -- |
| 161.16 | 0.595 | 4.3 | 0.638 | 1.41 | -- | 0.991 | -- | 0.632 | 20.2 | -- | -- | -- | -- |
| 164.11 | 0.6 | 4.3 | 0.61 | 1.41 | -- | -- | -- | 0.634 | 20.1 | -- | -- | -- | -- |
| 177.33 | 0.62 | 4.31 | 0.203 | -- | 1.84 | -- | -- | 0.412 | -- | 23.99 | 666 | -- | -- |
| 136.68 | 0.545 | 4.31 | -- | 1.28 | 1.05 | -- | -- | 0.531 | 19.6 | 25.68 | 1086 | -- | -- |
| 273.64 | 0.773 | 4.26 | 0.598 | -- | -- | -- | -- | 0.616 | -- | -- | -- | -- | -- |
| 173.93 | 0.617 | 4.31 | -- | 1.41 | -- | -- | -- | 0.566 | 20.1 | -- | -- | -- | -- |
| 178.32 | 0.622 | 4.31 | -- | -- | 1.88 | -- | -- | 0.382 | -- | 23.9 | 669 | -- | -- |
| 283.07 | 0.785 | 4.28 | -- | -- | -- | -- | -- | 0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 6 | 129.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 42 | 129.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 64 | 130.22 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 85 | 130.47 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 340 | 132.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 344 | 132.11 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 388 | 132.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 452 | 132.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 492 | 132.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 493 | 132.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 591 | 132.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 677 | 132.93 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 703 | 132.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 992 | 133.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |