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Os04g0302300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.96 (0.0346) R2 : 0.564
β1 : 0.885 (0.127) R2dD : 0.0483 R2D : 0.0396
β2 : 2.11 (0.0904) R2dC : 0.526 R2C : 0.517
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0701 (0.074) R2dN8 : 0.00115 R2N8 : -0.00468
σ : 0.651
deviance : 193.49
__
_____
C
peak time of C : 17.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.43 0.608 5.97 0.915 2.06 -0.693 -0.95 1.5 0.0436 18.7 19.65 76 -- --
177.13 0.62 5.97 0.881 2.05 -0.668 -0.764 -- 0.0433 18.6 19.48 76 -- --
169.65 0.607 5.98 0.923 2.07 -0.707 -- 1.4 0.0421 18.7 19.49 76 -- --
178.18 0.622 5.98 0.856 2.05 -0.72 -- -- 0.0339 18.7 19.5 76 -- --
203.71 0.665 5.94 0.672 -- -2.5 -- 2.06 0.0363 -- 2.33 693 -- --
189.15 0.645 5.95 0.88 2.12 -- -1.36 -- 0.0765 17.6 -- -- -- --
193.49 0.651 5.96 0.885 2.11 -- -- -- 0.0701 17.7 -- -- -- --
210.04 0.675 5.94 0.788 -- -2.47 -- -- -0.0408 -- 2.394 706 -- --
197.57 0.655 6 -- 2 -0.713 -- -- -0.0311 18.8 19.48 77 -- --
425.44 0.964 5.93 0.819 -- -- -- -- 0.02 -- -- -- -- --
214.13 0.685 5.98 -- 2.1 -- -- -- -0.0285 17.8 -- -- -- --
222.58 0.695 5.98 -- -- -2.44 -- -- -0.147 -- 0.1961 718 -- --
443.12 0.983 5.95 -- -- -- -- -- -0.0708 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 158.43 temperature 10.0 270 > th dose dependent rect. 2 7
3 159.09 radiation 40.0 270 < th dose dependent rect. 13 20
6 159.98 radiation 30.0 270 < th dose independent rect. 13 20
44 162.53 temperature 30.0 720 < th dose dependent rect. 22 10
45 162.54 temperature 10.0 720 > th dose dependent rect. 22 9
58 162.93 humidity 70.0 270 > th dose independent rect. 2 7
59 162.94 radiation 1.0 90 > th dose independent rect. 9 7
71 163.18 radiation 30.0 270 < th dose independent rect. 2 7
89 163.54 temperature 20.0 270 > th dose independent rect. 4 15
110 163.84 temperature 10.0 720 > th dose dependent rect. 21 12
115 163.90 atmosphere 995.0 270 > th dose independent rect. 15 16
129 164.06 precipitation 0.1 270 < th dose independent rect. 7 8
130 164.06 precipitation 0.1 270 < th dose dependent rect. 7 8
133 164.08 temperature 10.0 270 > th dose independent rect. 7 8
134 164.08 atmosphere 1015.0 270 < th dose independent rect. 7 8
135 164.08 temperature 10.0 270 > th dose independent rect. 15 16
137 164.11 temperature 30.0 720 < th dose dependent rect. 1 7
142 164.14 precipitation 0.1 270 < th dose independent rect. 15 16
145 164.14 precipitation 0.1 270 < th dose dependent rect. 15 16
150 164.22 precipitation 0.1 90 < th dose independent rect. 15 18
152 164.22 precipitation 0.1 90 < th dose dependent rect. 15 18
153 164.23 atmosphere 995.0 90 > th dose independent rect. 15 18
154 164.25 radiation 1.0 10 > th dose independent rect. 9 8
159 164.33 atmosphere 995.0 270 > th dose independent rect. 7 8
172 164.48 temperature 10.0 90 > th dose independent rect. 9 6
173 164.48 atmosphere 1015.0 90 < th dose independent rect. 9 6
174 164.48 precipitation 0.1 90 < th dose independent rect. 9 6
178 164.48 radiation 10.0 270 < th dose independent rect. 4 14
182 164.48 precipitation 0.1 90 < th dose dependent rect. 9 6
188 164.54 atmosphere 1000.0 90 > th dose independent rect. 9 6
204 164.61 wind 9.0 270 < th dose independent rect. 7 8
214 164.65 atmosphere 995.0 90 > th dose dependent rect. 9 7
234 164.83 atmosphere 995.0 10 > th dose dependent rect. 9 8
239 164.88 radiation 20.0 10 < th dose independent rect. 17 17
243 164.92 atmosphere 1010.0 270 < th dose independent rect. 2 7
245 164.93 wind 1.0 270 > th dose independent rect. 7 7
247 164.94 humidity 50.0 90 > th dose independent rect. 9 6
249 164.96 wind 1.0 90 > th dose independent rect. 9 6
270 165.10 humidity 50.0 270 > th dose independent rect. 7 8
289 165.20 humidity 50.0 1440 > th dose independent rect. 18 16
290 165.20 temperature 30.0 720 < th dose dependent rect. 3 2
293 165.21 wind 9.0 270 < th dose independent rect. 9 17
300 165.25 wind 9.0 270 < th dose independent rect. 15 16
303 165.25 temperature 30.0 720 < th dose dependent sin 9 NA
322 165.34 wind 7.0 270 < th dose independent rect. 2 7
326 165.35 radiation 1.0 270 > th dose independent rect. 7 8
330 165.38 wind 9.0 90 < th dose independent rect. 15 18
335 165.42 atmosphere 995.0 270 > th dose independent rect. 13 20
344 165.50 radiation 40.0 10 < th dose independent rect. 17 16
350 165.53 temperature 10.0 270 > th dose independent rect. 9 4
351 165.53 atmosphere 995.0 270 > th dose independent rect. 9 4
352 165.53 atmosphere 1015.0 270 < th dose independent rect. 9 4
353 165.53 temperature 10.0 270 > th dose independent rect. 13 20
354 165.53 radiation 20.0 10 < th dose independent rect. 14 20
361 165.56 precipitation 0.1 10 < th dose independent rect. 17 16
362 165.56 atmosphere 1015.0 90 < th dose independent rect. 15 18
363 165.56 radiation 10.0 270 < th dose independent rect. 23 22
364 165.56 precipitation 0.1 10 < th dose dependent rect. 17 16
378 165.65 precipitation 0.1 270 < th dose independent rect. 9 4
379 165.65 precipitation 0.1 270 < th dose dependent rect. 9 4
380 165.66 precipitation 0.1 270 < th dose independent rect. 2 7
383 165.66 precipitation 0.1 270 < th dose dependent rect. 2 7
387 165.68 precipitation 0.1 270 < th dose independent rect. 13 20
388 165.68 precipitation 0.1 270 < th dose dependent rect. 13 20
389 165.69 temperature 30.0 90 < th dose independent rect. 9 6
400 165.74 temperature 10.0 270 > th dose independent rect. 2 7
403 165.74 atmosphere 995.0 270 > th dose independent rect. 2 7
405 165.74 temperature 10.0 270 > th dose independent rect. 9 17
410 165.77 atmosphere 995.0 10 > th dose independent rect. 17 16
414 165.78 radiation 40.0 270 < th dose dependent rect. 2 7
458 166.01 wind 9.0 270 < th dose independent rect. 9 4
459 166.01 temperature 10.0 10 > th dose independent rect. 9 8
461 166.01 atmosphere 1015.0 10 < th dose independent rect. 9 8
462 166.01 precipitation 0.1 10 < th dose independent rect. 9 8
463 166.01 temperature 10.0 10 > th dose independent rect. 17 16
464 166.01 precipitation 0.1 10 < th dose dependent rect. 9 8
477 166.09 temperature 10.0 270 > th dose dependent rect. 14 19
478 166.12 humidity 50.0 270 > th dose independent rect. 9 4
479 166.12 radiation 20.0 270 < th dose dependent rect. 4 14
484 166.15 temperature 30.0 270 < th dose independent rect. 9 4
488 166.16 temperature 10.0 90 > th dose dependent rect. 16 17
508 166.23 atmosphere 995.0 10 > th dose independent rect. 9 8
521 166.27 wind 1.0 270 > th dose independent rect. 9 4
525 166.29 atmosphere 1000.0 270 > th dose independent rect. 21 16
548 166.36 humidity 80.0 270 < th dose independent rect. 6 8
589 166.47 radiation 1.0 270 > th dose independent rect. 9 4
596 166.49 temperature 30.0 270 < th dose independent rect. 2 7
601 166.49 radiation 40.0 10 < th dose dependent rect. 15 19
610 166.52 precipitation 0.1 270 < th dose independent rect. 9 17
612 166.52 precipitation 0.1 270 < th dose dependent rect. 9 17
616 166.55 temperature 10.0 10 > th dose dependent rect. 17 16
632 166.65 humidity 50.0 270 > th dose dependent rect. 2 8
646 166.72 atmosphere 1015.0 10 < th dose independent rect. 17 16
648 166.72 radiation 1.0 270 < th dose dependent rect. 18 10
655 166.75 wind 9.0 270 < th dose independent rect. 13 20
656 166.75 wind 9.0 270 < th dose dependent rect. 2 7
699 166.88 radiation 1.0 270 < th dose independent rect. 18 10
714 166.95 humidity 60.0 270 > th dose independent rect. 18 10
738 167.04 humidity 50.0 10 > th dose independent rect. 17 16
743 167.05 temperature 10.0 270 > th dose independent rect. 19 9
744 167.05 temperature 30.0 270 < th dose independent rect. 19 9
746 167.05 atmosphere 995.0 270 > th dose independent rect. 19 9
753 167.05 atmosphere 1015.0 270 < th dose independent rect. 4 15
767 167.08 wind 9.0 270 < th dose independent rect. 19 9
778 167.12 wind 1.0 270 > th dose independent rect. 14 17
781 167.13 temperature 25.0 720 < th dose dependent rect. 5 1
786 167.15 atmosphere 995.0 270 > th dose independent rect. 13 8
797 167.17 humidity 50.0 270 > th dose independent rect. 21 16
798 167.18 temperature 10.0 1440 > th dose independent rect. 10 6
802 167.18 radiation 20.0 10 < th dose independent rect. 5 17
803 167.18 temperature 10.0 1440 > th dose independent rect. 16 18
862 167.29 atmosphere 1015.0 270 < th dose independent rect. 13 8
878 167.31 radiation 20.0 270 < th dose dependent rect. 23 23
884 167.32 temperature 10.0 270 > th dose independent rect. 13 8
886 167.32 temperature 10.0 270 > th dose independent rect. 21 16
891 167.33 wind 1.0 270 > th dose independent rect. 13 8
893 167.33 temperature 10.0 720 > th dose dependent rect. 21 6
927 167.43 radiation 10.0 270 < th dose independent sin 2 NA
938 167.45 atmosphere 1015.0 270 < th dose independent rect. 13 20
951 167.48 temperature 10.0 720 > th dose dependent sin 9 NA
956 167.50 humidity 80.0 270 < th dose independent rect. 24 14
960 167.52 precipitation 0.1 270 < th dose independent rect. 13 8
964 167.52 precipitation 0.1 270 < th dose dependent rect. 13 8
968 167.55 precipitation 0.1 270 < th dose independent rect. 4 15
969 167.55 precipitation 0.1 270 < th dose dependent rect. 4 15
977 167.60 radiation 20.0 10 < th dose independent rect. 12 22
1000 167.68 temperature 30.0 270 < th dose independent rect. 21 16