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Os04g0301700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 14 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0264) R2 : 0.699
β1 : 0.876 (0.0963) R2dD : 0.0565 R2D : 0.0315
β2 : 1.98 (0.0633) R2dC : 0.649 R2C : 0.639
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.213 (0.0562) R2dN8 : 0.0127 R2N8 : -0.00261
σ : 0.495
deviance : 111.63
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_____
C
peak time of C : 10.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.45 0.429 10.3 0.906 1.21 -0.938 -1.3 0.565 0.211 9.28 24.09 7 -- --
84.06 0.427 10.3 0.917 1.22 -0.922 -1.84 -- 0.211 9.35 24.54 6 -- --
85.65 0.431 10.3 0.895 1.17 -0.961 -- 1.41 0.21 9.14 21.62 6 -- --
95.68 0.456 10.3 0.84 1.21 -0.926 -- -- 0.207 9.22 22.92 6 -- --
122.37 0.515 10.3 0.943 -- -1.52 -- 1.58 0.313 -- 12.42 4 -- --
100.63 0.47 10.2 0.941 1.97 -- -1.65 -- 0.218 10.4 -- -- -- --
111.63 0.495 10.2 0.876 1.98 -- -- -- 0.213 10.4 -- -- -- --
134.52 0.54 10.3 0.896 -- -1.52 -- -- 0.206 -- 11.17 4 -- --
114.23 0.498 10.3 -- 1.19 -0.975 -- -- 0.114 9.06 23.55 6 -- --
351.5 0.876 10.3 0.843 -- -- -- -- 0.206 -- -- -- -- --
131.84 0.537 10.3 -- 1.98 -- -- -- 0.116 10.4 -- -- -- --
155.02 0.58 10.3 -- -- -1.53 -- -- 0.107 -- 12.59 2 -- --
370.25 0.898 10.3 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.41 temperature 15.0 10 > th dose dependent rect. 22 18
2 79.42 temperature 10.0 270 > th dose dependent rect. 18 21
3 79.58 temperature 10.0 270 > th dose dependent rect. 19 19
4 79.68 radiation 10.0 10 < th dose dependent sin 22 NA
9 79.94 temperature 20.0 10 > th dose dependent rect. 20 20
24 80.79 radiation 20.0 10 < th dose independent rect. 16 18
32 81.08 radiation 40.0 10 < th dose dependent rect. 16 18
39 81.16 temperature 10.0 30 > th dose dependent rect. 9 7
41 81.19 radiation 1.0 90 > th dose independent rect. 9 7
42 81.20 radiation 40.0 90 < th dose dependent rect. 15 18
56 81.42 radiation 10.0 10 > th dose independent rect. 9 23
63 81.59 radiation 20.0 10 < th dose independent rect. 5 17
64 81.60 radiation 20.0 10 < th dose dependent rect. 5 17
72 81.83 radiation 30.0 10 < th dose dependent rect. 13 21
76 81.86 radiation 20.0 90 < th dose independent rect. 16 17
83 82.05 radiation 20.0 10 < th dose independent rect. 5 15
84 82.05 radiation 20.0 10 < th dose independent rect. 13 21
94 82.12 temperature 10.0 90 > th dose dependent rect. 9 18
115 82.44 radiation 20.0 10 < th dose independent rect. 3 19
122 82.52 temperature 10.0 270 > th dose dependent rect. 19 8
149 82.96 radiation 40.0 90 < th dose dependent rect. 13 20
161 83.03 radiation 40.0 90 < th dose dependent rect. 13 22
167 83.08 atmosphere 995.0 90 > th dose independent rect. 16 17
169 83.09 wind 1.0 270 > th dose independent rect. 2 17
171 83.09 temperature 10.0 10 > th dose dependent rect. 9 18
181 83.17 humidity 50.0 90 > th dose independent rect. 16 17
187 83.23 radiation 20.0 10 < th dose independent rect. 3 17
196 83.31 atmosphere 1015.0 4320 > th dose independent rect. 9 2
200 83.32 atmosphere 1015.0 4320 > th dose dependent rect. 8 1
206 83.35 atmosphere 1015.0 4320 < th dose independent rect. 9 2
211 83.37 radiation 10.0 10 > th dose independent rect. 9 9
235 83.46 atmosphere 1015.0 90 < th dose independent rect. 16 17
273 83.61 radiation 10.0 10 > th dose independent sin 20 NA
284 83.66 radiation 20.0 10 < th dose dependent rect. 13 9
293 83.71 precipitation 0.1 90 < th dose independent rect. 9 7
295 83.71 precipitation 0.1 90 < th dose dependent rect. 9 7
310 83.76 temperature 10.0 90 > th dose independent rect. 9 7
311 83.76 atmosphere 1015.0 90 < th dose independent rect. 9 7
312 83.76 temperature 10.0 90 > th dose independent rect. 16 17
322 83.80 wind 1.0 270 > th dose independent rect. 1 8
362 83.91 temperature 20.0 10 > th dose dependent rect. 9 20
368 83.93 radiation 20.0 90 < th dose independent rect. 13 20
371 83.94 wind 9.0 90 < th dose independent rect. 16 17
407 84.04 humidity 80.0 10 < th dose independent rect. 9 7
437 84.13 radiation 10.0 43200 < th dose dependent rect. 21 7
450 84.18 radiation 20.0 10 < th dose independent rect. 1 23
461 84.21 radiation 20.0 30 < th dose independent rect. 13 9
470 84.22 radiation 30.0 10 < th dose dependent rect. 3 19
483 84.27 wind 9.0 90 < th dose independent rect. 9 7
507 84.31 radiation 1.0 270 < th dose independent rect. 4 14
513 84.33 radiation 1.0 270 > th dose independent rect. 7 8
516 84.33 radiation 20.0 10 < th dose independent rect. 16 22
542 84.38 precipitation 0.1 90 < th dose independent rect. 16 17
546 84.38 precipitation 0.1 90 < th dose dependent rect. 16 17
565 84.42 radiation 20.0 10 < th dose dependent rect. 10 12
575 84.44 radiation 1.0 270 < th dose independent rect. 3 16
576 84.45 atmosphere 1015.0 4320 < th dose independent sin 4 NA
581 84.46 atmosphere 1015.0 4320 > th dose independent sin 4 NA
587 84.47 temperature 10.0 270 > th dose dependent rect. 7 7
608 84.50 humidity 50.0 90 > th dose independent rect. 9 7
619 84.52 radiation 20.0 10 < th dose independent sin 22 NA
621 84.52 atmosphere 1015.0 4320 > th dose dependent sin 5 NA
686 84.61 humidity 50.0 270 > th dose independent rect. 7 8
740 84.71 temperature 10.0 1440 > th dose independent rect. 10 7
743 84.71 temperature 10.0 1440 > th dose independent rect. 17 17
752 84.72 temperature 25.0 270 < th dose independent rect. 12 20
839 84.84 radiation 30.0 270 < th dose independent rect. 1 8
874 84.89 temperature 25.0 270 > th dose independent rect. 19 19
875 84.89 radiation 30.0 10 < th dose dependent rect. 3 17
917 84.95 radiation 10.0 270 < th dose dependent rect. 3 16
955 84.99 radiation 20.0 10 < th dose dependent rect. 13 7
987 85.04 radiation 20.0 10 < th dose independent no NA NA