FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0299500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0433) R2 : 0.00285
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.104 (0.0911) R2dN8 : 0.00368 R2N8 : 0.00285
σ : 0.815
deviance : 304.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
293.49 0.805 3.3 -0.721 0.00556 1.09 -0.775 -5.3 -0.0813 6.85 30.34 660 -- --
294.32 0.799 3.25 -0.258 0.00589 0.555 -0.652 -- -0.0808 6.59 30.7 606 -- --
294.87 0.8 3.29 -0.647 0.0287 1.05 -- -4.42 -0.0737 7.35 30.6 662 -- --
295.12 0.8 3.25 -0.248 0.0818 0.637 -- -- -0.0567 10.2 30.7 606 -- --
294.89 0.8 3.29 -0.671 -- 1.06 -- -4.61 -0.0667 -- 30.5 662 -- --
299.98 0.812 3.26 -0.177 0.155 -- 1 -- -0.125 18.3 -- -- -- --
302.27 0.814 3.26 -0.187 0.17 -- -- -- -0.121 17 -- -- -- --
295.36 0.8 3.24 -0.246 -- 0.579 -- -- -0.0652 -- 31.3 569 -- --
296.86 0.802 3.23 -- 0.0834 0.6 -- -- -0.0292 12.4 30.7 606 -- --
303.78 0.814 3.26 -0.193 -- -- -- -- -0.125 -- -- -- -- --
303.19 0.815 3.25 -- 0.173 -- -- -- -0.1 17 -- -- -- --
297.05 0.803 3.24 -- -- 0.549 -- -- -0.0472 -- 31.43 629 -- --
304.77 0.815 3.25 -- -- -- -- -- -0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.30 precipitation 0.1 30 > th dose independent rect. 4 10
5 284.31 precipitation 0.1 30 > th dose dependent rect. 4 10
9 284.32 precipitation 0.1 90 > th dose dependent rect. 4 3
10 284.33 precipitation 0.1 10 > th dose independent rect. 4 4
26 284.33 wind 3.0 10 > th dose dependent rect. 6 1
34 284.36 wind 3.0 90 > th dose independent rect. 4 1
56 284.37 wind 3.0 90 > th dose dependent rect. 4 3
96 284.42 wind 5.0 90 > th dose independent rect. 4 3
107 284.46 wind 3.0 10 > th dose independent rect. 6 1
170 286.28 wind 1.0 720 > th dose independent rect. 8 9
176 286.69 atmosphere 1005.0 90 < th dose independent rect. 20 2
206 287.38 radiation 1.0 10 < th dose independent rect. 6 1
209 287.63 humidity 90.0 90 > th dose dependent rect. 20 1
212 288.13 temperature 30.0 720 < th dose independent rect. 14 20
226 289.02 temperature 20.0 720 > th dose independent rect. 20 2
235 289.20 atmosphere 1005.0 270 > th dose independent rect. 4 1
237 289.31 atmosphere 1005.0 10 > th dose independent rect. 4 5
240 289.50 humidity 90.0 1440 < th dose independent rect. 22 5
243 289.59 atmosphere 1010.0 30 < th dose dependent rect. 21 1
246 289.67 precipitation 0.1 10 > th dose independent rect. 19 1
256 289.67 precipitation 0.1 10 > th dose dependent rect. 19 1
267 289.68 humidity 90.0 720 > th dose independent rect. 22 5
271 289.79 wind 7.0 30 > th dose dependent rect. 19 1
275 289.92 humidity 70.0 30 > th dose dependent rect. 21 1
278 289.93 temperature 10.0 720 > th dose dependent rect. 20 2
288 290.06 temperature 10.0 10 > th dose dependent rect. 21 11
290 290.09 temperature 30.0 720 < th dose independent rect. 22 22
292 290.11 temperature 20.0 90 > th dose independent rect. 3 5
297 290.26 wind 1.0 720 > th dose independent rect. 8 2
308 290.39 wind 3.0 90 > th dose independent rect. 8 12
310 290.42 humidity 50.0 720 > th dose independent rect. 17 15
327 290.63 wind 3.0 720 > th dose independent rect. 5 1
328 290.64 atmosphere 1010.0 10 < th dose dependent rect. 16 7
329 290.65 temperature 20.0 30 > th dose independent rect. 21 1
335 290.70 humidity 80.0 1440 > th dose dependent rect. 22 5
338 290.72 temperature 30.0 720 < th dose independent rect. 14 16
343 290.75 temperature 30.0 720 < th dose independent rect. 20 17
345 290.77 wind 5.0 270 > th dose independent rect. 2 4
351 290.83 temperature 30.0 720 < th dose independent rect. 13 7
362 290.95 wind 3.0 270 > th dose dependent rect. 2 4
367 290.99 wind 3.0 90 > th dose independent rect. 6 14
369 291.00 wind 7.0 720 < th dose independent rect. 22 7
376 291.02 temperature 20.0 90 > th dose dependent rect. 3 5
377 291.03 wind 3.0 10 > th dose independent rect. 18 3
378 291.03 temperature 30.0 270 < th dose independent rect. 11 11
382 291.06 atmosphere 995.0 720 > th dose dependent rect. 8 2
387 291.08 atmosphere 1015.0 1440 < th dose independent rect. 8 3
390 291.09 atmosphere 1015.0 1440 < th dose independent rect. 6 5
393 291.10 wind 7.0 270 > th dose dependent rect. 2 6
395 291.12 wind 7.0 10 < th dose independent rect. 21 1
398 291.13 humidity 50.0 1440 > th dose dependent rect. 22 3
399 291.14 atmosphere 1015.0 1440 < th dose independent rect. 10 1
401 291.14 wind 3.0 90 > th dose independent rect. 23 21
406 291.17 humidity 50.0 1440 > th dose dependent rect. 22 5
411 291.19 wind 3.0 10 > th dose dependent rect. 18 2
425 291.24 humidity 80.0 30 > th dose independent rect. 21 1
429 291.25 atmosphere 1010.0 270 > th dose dependent rect. 5 3
445 291.30 atmosphere 1015.0 1440 > th dose independent rect. 10 1
464 291.30 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
491 291.35 atmosphere 1005.0 90 < th dose independent rect. 16 6
499 291.39 precipitation 0.1 90 < th dose independent rect. 22 23
501 291.39 precipitation 0.1 90 < th dose dependent rect. 22 23
502 291.40 atmosphere 1010.0 270 > th dose dependent rect. 5 1
519 291.43 precipitation 0.1 720 < th dose independent rect. 1 9
522 291.43 precipitation 0.1 720 < th dose dependent rect. 1 9
528 291.45 precipitation 0.1 90 < th dose independent rect. 9 11
530 291.45 precipitation 0.1 90 < th dose dependent rect. 9 11
544 291.47 wind 3.0 720 < th dose independent rect. 17 13
551 291.51 humidity 90.0 1440 < th dose independent rect. 1 1
556 291.53 precipitation 0.1 720 < th dose independent rect. 23 11
558 291.53 precipitation 0.1 720 < th dose dependent rect. 23 11
576 291.63 temperature 30.0 720 < th dose independent rect. 5 15
585 291.66 wind 3.0 30 > th dose independent rect. 21 1
591 291.67 temperature 30.0 720 < th dose independent rect. 8 9
645 291.77 atmosphere 1010.0 90 > th dose dependent rect. 8 1
657 291.78 wind 3.0 90 > th dose independent rect. 1 19
667 291.80 temperature 30.0 720 < th dose independent rect. 11 2
668 291.80 wind 1.0 720 > th dose independent rect. 5 15
677 291.82 wind 7.0 720 < th dose independent rect. 1 9
701 291.83 temperature 30.0 720 < th dose independent rect. 22 19
707 291.85 wind 1.0 720 > th dose independent rect. 13 7
710 291.86 temperature 25.0 90 < th dose independent rect. 21 1
719 291.86 wind 3.0 1440 > th dose dependent rect. 23 2
725 291.88 temperature 10.0 30 > th dose dependent rect. 21 1
730 291.89 temperature 30.0 720 < th dose independent rect. 10 4
731 291.89 wind 7.0 720 < th dose independent rect. 23 11
785 291.93 temperature 10.0 1440 > th dose independent rect. 22 1
788 291.93 temperature 30.0 1440 < th dose independent rect. 22 1
792 291.93 humidity 50.0 1440 > th dose independent rect. 22 1
800 291.93 atmosphere 995.0 1440 > th dose independent rect. 22 1
801 291.93 radiation 1.0 1440 < th dose independent rect. 22 1
825 291.93 temperature 10.0 1440 > th dose independent rect. 23 23
828 291.93 radiation 1.0 1440 < th dose dependent rect. 22 1
838 291.94 precipitation 0.1 30 < th dose independent rect. 21 1
846 291.94 precipitation 0.1 30 < th dose dependent rect. 21 1
855 291.95 atmosphere 1005.0 10 > th dose dependent rect. 12 16
856 291.96 temperature 10.0 30 > th dose independent rect. 21 1
859 291.96 humidity 50.0 30 > th dose independent rect. 21 1
862 291.96 atmosphere 995.0 30 > th dose independent rect. 21 1
865 291.96 radiation 1.0 30 < th dose independent rect. 21 1
871 291.96 precipitation 0.1 10 > th dose independent rect. 5 19
873 291.96 temperature 10.0 30 > th dose independent rect. 22 23
874 291.96 radiation 1.0 30 < th dose dependent rect. 21 1
885 291.96 precipitation 0.1 10 > th dose dependent rect. 5 19
892 291.98 atmosphere 995.0 720 > th dose independent rect. 17 15
902 291.99 atmosphere 1005.0 90 > th dose dependent rect. 12 15
906 292.00 atmosphere 1005.0 270 > th dose independent rect. 9 14
957 292.06 precipitation 0.1 720 < th dose independent rect. 22 13
958 292.06 precipitation 0.1 90 < th dose independent rect. 23 21
960 292.06 precipitation 0.1 720 < th dose dependent rect. 22 13
962 292.06 precipitation 0.1 90 < th dose dependent rect. 23 21
964 292.07 wind 3.0 1440 > th dose independent rect. 23 1
972 292.08 wind 1.0 30 > th dose dependent rect. 21 1
987 292.11 atmosphere 1015.0 1440 > th dose dependent rect. 1 11