Os04g0296700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0296700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.34 | 0.309 | 11.6 | -1.13 | 0.724 | -0.756 | 0.081 | 1.79 | -0.475 | 0.596 | 93.8 | 49 | -- | -- |
| 45.67 | 0.315 | 11.7 | -1.13 | 0.726 | -0.708 | 0.374 | -- | -0.482 | 0.805 | 93.84 | 135 | -- | -- |
| 43.36 | 0.307 | 11.6 | -1.14 | 0.724 | -0.75 | -- | 1.83 | -0.476 | 0.578 | 93.77 | 52 | -- | -- |
| 45.8 | 0.315 | 11.6 | -1.16 | 0.698 | -0.832 | -- | -- | -0.465 | 0.692 | 94.2 | 150 | -- | -- |
| 68.31 | 0.385 | 11.7 | -1.16 | -- | -0.68 | -- | 0.219 | -0.493 | -- | 91.69 | 908 | -- | -- |
| 51.06 | 0.335 | 11.6 | -1.19 | 0.651 | -- | 0.139 | -- | -0.406 | 23.8 | -- | -- | -- | -- |
| 51.14 | 0.335 | 11.6 | -1.19 | 0.651 | -- | -- | -- | -0.406 | 23.8 | -- | -- | -- | -- |
| 61.69 | 0.366 | 11.6 | -1.12 | -- | -0.846 | -- | -- | -0.491 | -- | 77.96 | 932 | -- | -- |
| 80.23 | 0.417 | 11.6 | -- | 0.727 | -0.801 | -- | -- | -0.366 | 0.901 | 93.29 | 154 | -- | -- |
| 77.78 | 0.412 | 11.6 | -1.17 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 88.49 | 0.44 | 11.6 | -- | 0.637 | -- | -- | -- | -0.274 | 23.7 | -- | -- | -- | -- |
| 93.2 | 0.45 | 11.6 | -- | -- | -0.968 | -- | -- | -0.409 | -- | 83 | 946 | -- | -- |
| 113.98 | 0.498 | 11.6 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.87 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 6 | 43.27 | humidity | 80.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 12 | 43.38 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 6 |
| 20 | 43.50 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 6 |
| 24 | 43.54 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 28 | 43.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 29 | 43.60 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 47 | 43.81 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 50 | 43.84 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 16 |
| 67 | 43.94 | humidity | 90.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 106 | 44.16 | humidity | 90.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 112 | 44.19 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 18 |
| 149 | 44.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 158 | 44.36 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 159 | 44.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 161 | 44.38 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 171 | 44.42 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 24 | 14 |
| 198 | 44.46 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 201 | 44.47 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 212 | 44.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 252 | 44.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 278 | 44.61 | temperature | 30.0 | 10 | < th | dose independent | rect. | 7 | 20 |
| 289 | 44.62 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 12 |
| 295 | 44.64 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 299 | 44.64 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 300 | 44.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 450 | 44.80 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 461 | 44.81 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 473 | 44.82 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 474 | 44.83 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 475 | 44.83 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 12 |
| 488 | 44.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 513 | 44.87 | wind | 1.0 | 10 | > th | dose independent | rect. | 7 | 21 |
| 528 | 44.90 | radiation | 40.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 582 | 44.95 | wind | 1.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 583 | 44.95 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 592 | 44.95 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 593 | 44.96 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 4 |
| 600 | 44.96 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 618 | 44.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 623 | 44.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 628 | 44.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 651 | 45.01 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 22 |
| 653 | 45.01 | humidity | 90.0 | 30 | > th | dose dependent | no | NA | NA |
| 666 | 45.01 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 723 | 45.03 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 807 | 45.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 823 | 45.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 18 |
| 841 | 45.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 13 |
| 846 | 45.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 862 | 45.10 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 865 | 45.10 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 913 | 45.13 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 1 |
| 914 | 45.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 937 | 45.14 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 953 | 45.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 955 | 45.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 956 | 45.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 980 | 45.17 | wind | 9.0 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 982 | 45.17 | humidity | 90.0 | 90 | < th | dose independent | rect. | 23 | 13 |
| 999 | 45.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 1000 | 45.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 14 |