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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0295500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.68 (0.0364) R2 : 0.102
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.599 (0.0906) R2dC : 0.0865 R2C : 0.0805
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.223 (0.0765) R2dN8 : 0.0216 R2N8 : 0.0156
σ : 0.686
deviance : 214.76
__
_____
C
peak time of C : 8.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.02 0.65 3.12 2.77 0.566 27.6 -0.183 -169 -0.274 9.03 995 1442 -- --
200.89 0.665 3.69 -0.636 0.601 -0.659 -0.13 -- -0.275 8.85 996.7 1372 -- --
195.12 0.651 3.12 2.75 0.565 27.5 -- -168 -0.274 9.14 995 1406 -- --
190.96 0.644 3.67 -0.683 0.583 -1.58 -- -- -0.238 8.73 996.6 2107 -- --
213.51 0.681 3.12 2.83 -- 28.3 -- -172 -0.275 -- 995.1 1725 -- --
205.11 0.671 3.69 -0.599 0.6 -- -0.133 -- -0.29 8.84 -- -- -- --
205.16 0.671 3.69 -0.603 0.6 -- -- -- -0.29 8.9 -- -- -- --
210.15 0.675 3.7 -0.643 -- -1.65 -- -- -0.244 -- 996.7 2164 -- --
201.84 0.662 3.67 -- 0.571 -1.47 -- -- -0.184 8.89 996.6 2215 -- --
225.7 0.702 3.71 -0.604 -- -- -- -- -0.286 -- -- -- -- --
214.76 0.686 3.68 -- 0.599 -- -- -- -0.223 8.98 -- -- -- --
221.14 0.693 3.68 -- -- -1.57 -- -- -0.172 -- 996.6 2220 -- --
235.31 0.716 3.69 -- -- -- -- -- -0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 182.71 atmosphere 1000.0 90 < th dose dependent rect. 6 3
3 184.24 atmosphere 1000.0 10 < th dose independent rect. 6 2
4 184.24 atmosphere 1000.0 10 < th dose dependent rect. 6 2
7 184.36 atmosphere 1000.0 90 < th dose independent rect. 6 1
30 187.54 atmosphere 1000.0 270 < th dose dependent rect. 4 4
33 187.68 atmosphere 995.0 1440 > th dose independent rect. 3 12
47 188.65 atmosphere 995.0 1440 > th dose independent rect. 21 19
50 189.10 atmosphere 1000.0 30 > th dose independent rect. 3 8
56 189.70 humidity 90.0 270 < th dose independent rect. 18 11
62 190.22 atmosphere 1000.0 10 > th dose independent rect. 24 11
63 190.23 atmosphere 995.0 1440 > th dose independent rect. 12 20
85 191.07 humidity 70.0 43200 < th dose independent rect. 8 1
86 191.07 humidity 60.0 43200 < th dose independent rect. 11 1
87 191.08 temperature 30.0 720 < th dose independent rect. 15 7
91 191.30 wind 5.0 720 < th dose dependent rect. 23 1
97 191.50 humidity 60.0 43200 < th dose independent rect. 9 3
98 191.52 wind 3.0 720 < th dose independent rect. 23 1
101 191.68 temperature 25.0 720 > th dose dependent rect. 3 2
108 191.79 atmosphere 995.0 1440 > th dose independent rect. 12 17
109 191.83 humidity 90.0 270 < th dose dependent rect. 19 9
115 191.94 radiation 1.0 270 > th dose independent rect. 12 20
118 192.01 wind 1.0 720 > th dose independent rect. 10 16
121 192.06 temperature 25.0 720 > th dose dependent rect. 1 2
128 192.13 humidity 70.0 43200 > th dose independent rect. 8 1
129 192.13 atmosphere 995.0 1440 > th dose independent rect. 12 13
131 192.15 atmosphere 1010.0 10 < th dose independent rect. 3 17
137 192.18 wind 7.0 30 < th dose dependent rect. 3 8
139 192.19 atmosphere 1000.0 270 < th dose independent rect. 4 1
147 192.22 atmosphere 1010.0 30 < th dose independent rect. 3 8
156 192.29 atmosphere 995.0 30 > th dose dependent rect. 3 8
167 192.35 atmosphere 1015.0 90 < th dose dependent rect. 6 7
178 192.41 atmosphere 995.0 1440 > th dose independent sin 12 NA
204 192.61 temperature 25.0 720 > th dose independent rect. 2 1
206 192.61 atmosphere 1015.0 10 < th dose dependent rect. 6 7
207 192.62 humidity 90.0 90 < th dose independent rect. 20 17
213 192.66 atmosphere 1015.0 720 < th dose independent rect. 3 16
216 192.67 temperature 20.0 4320 < th dose independent rect. 22 1
222 192.70 humidity 70.0 43200 < th dose dependent rect. 8 2
226 192.73 atmosphere 995.0 1440 > th dose independent sin 3 NA
231 192.78 wind 3.0 30 > th dose independent rect. 20 17
232 192.80 atmosphere 1000.0 90 > th dose independent rect. 3 16
236 192.82 humidity 90.0 270 < th dose independent rect. 18 18
246 192.86 atmosphere 1005.0 30 > th dose independent rect. 2 5
248 192.87 humidity 70.0 720 > th dose independent rect. 19 8
256 192.91 atmosphere 1005.0 90 > th dose independent rect. 3 3
265 192.96 temperature 20.0 4320 > th dose independent rect. 22 1
267 192.97 radiation 1.0 90 < th dose independent rect. 3 7
272 192.98 radiation 1.0 90 < th dose independent rect. 3 5
277 192.99 wind 7.0 90 < th dose independent rect. 3 16
297 193.07 humidity 80.0 10 > th dose dependent rect. 3 8
303 193.11 wind 3.0 30 > th dose independent rect. 9 3
304 193.11 humidity 60.0 43200 > th dose independent rect. 8 4
305 193.12 humidity 90.0 270 < th dose independent sin 11 NA
310 193.13 temperature 10.0 90 > th dose dependent rect. 13 7
312 193.15 humidity 90.0 10 < th dose independent rect. 20 11
317 193.16 wind 1.0 90 > th dose dependent rect. 20 16
329 193.21 wind 1.0 14400 < th dose dependent rect. 6 2
342 193.28 wind 1.0 1440 > th dose independent rect. 23 2
344 193.28 humidity 90.0 30 > th dose independent rect. 3 7
354 193.30 radiation 10.0 90 < th dose dependent rect. 3 7
360 193.33 wind 7.0 90 < th dose independent rect. 13 7
362 193.33 humidity 80.0 270 > th dose dependent rect. 21 10
367 193.36 temperature 30.0 720 < th dose independent rect. 18 9
382 193.43 humidity 60.0 43200 < th dose dependent rect. 11 4
390 193.45 atmosphere 1005.0 270 > th dose independent rect. 2 1
418 193.50 humidity 80.0 10 > th dose dependent rect. 3 11
425 193.52 wind 9.0 720 < th dose independent rect. 7 8
426 193.52 atmosphere 1000.0 270 > th dose independent rect. 24 8
429 193.52 temperature 10.0 10 > th dose dependent rect. 13 7
434 193.55 radiation 1.0 270 > th dose independent rect. 12 7
460 193.58 humidity 80.0 1440 < th dose independent rect. 3 6
479 193.65 humidity 80.0 1440 < th dose independent rect. 7 2
481 193.65 wind 3.0 30 < th dose independent rect. 3 8
501 193.69 wind 7.0 10 < th dose independent rect. 13 7
504 193.70 wind 1.0 720 < th dose independent rect. 10 15
508 193.70 wind 9.0 30 < th dose dependent rect. 13 22
525 193.74 humidity 90.0 270 > th dose dependent rect. 13 19
542 193.79 wind 3.0 30 > th dose independent rect. 7 6
560 193.81 atmosphere 1000.0 270 > th dose independent rect. 3 14
577 193.83 temperature 10.0 720 > th dose independent rect. 19 8
579 193.83 humidity 50.0 720 > th dose independent rect. 19 8
580 193.83 atmosphere 995.0 720 > th dose independent rect. 19 8
581 193.83 radiation 1.0 720 < th dose independent rect. 19 8
586 193.83 temperature 10.0 720 > th dose independent rect. 3 16
587 193.83 atmosphere 995.0 1440 > th dose independent rect. 3 22
589 193.83 humidity 50.0 30 > th dose dependent rect. 3 8
590 193.83 radiation 10.0 720 < th dose dependent rect. 19 8
595 193.84 wind 1.0 14400 < th dose independent rect. 6 1
597 193.84 temperature 25.0 10 < th dose independent rect. 3 4
606 193.84 temperature 10.0 90 > th dose dependent rect. 13 17
609 193.85 temperature 25.0 720 < th dose independent rect. 3 1
611 193.85 radiation 40.0 30 < th dose independent rect. 12 8
613 193.85 wind 9.0 270 < th dose dependent rect. 12 7
614 193.85 atmosphere 995.0 90 > th dose dependent rect. 19 8
620 193.87 temperature 30.0 720 < th dose independent rect. 11 10
622 193.87 atmosphere 1000.0 10 > th dose dependent rect. 20 11
623 193.87 wind 9.0 90 < th dose dependent rect. 3 16
648 193.91 atmosphere 995.0 90 > th dose independent rect. 13 7
661 193.93 humidity 90.0 10 < th dose independent rect. 20 17
662 193.94 humidity 90.0 90 < th dose independent rect. 1 12
663 193.94 atmosphere 1000.0 10 > th dose independent rect. 13 22
669 193.96 temperature 10.0 90 > th dose independent rect. 13 7
671 193.96 atmosphere 1010.0 90 < th dose independent rect. 13 7
674 193.96 temperature 10.0 90 > th dose independent rect. 20 17
675 193.96 temperature 30.0 720 < th dose independent rect. 10 17
676 193.96 atmosphere 995.0 90 > th dose independent rect. 20 17
684 193.97 precipitation 0.1 90 < th dose independent rect. 20 17
685 193.97 precipitation 0.1 90 < th dose dependent rect. 20 17
700 193.99 atmosphere 995.0 10 > th dose dependent rect. 20 8
708 194.00 humidity 60.0 43200 < th dose dependent rect. 14 1
710 194.00 radiation 40.0 30 < th dose dependent rect. 3 8
725 194.02 temperature 25.0 10 > th dose dependent rect. 13 22
730 194.03 humidity 90.0 270 > th dose dependent sin 11 NA
742 194.05 wind 1.0 90 > th dose dependent rect. 6 7
745 194.05 humidity 90.0 10 > th dose dependent rect. 3 23
746 194.06 precipitation 0.1 10 < th dose independent rect. 13 7
747 194.06 precipitation 0.1 10 < th dose dependent rect. 13 7
759 194.08 temperature 10.0 90 > th dose dependent rect. 12 23
765 194.10 atmosphere 995.0 10 > th dose independent rect. 13 7
767 194.10 humidity 80.0 10 > th dose independent rect. 3 11
772 194.11 precipitation 0.1 90 < th dose independent rect. 13 7
773 194.11 humidity 50.0 90 > th dose independent rect. 20 17
774 194.11 precipitation 0.1 90 < th dose dependent rect. 13 7
786 194.13 humidity 60.0 43200 < th dose dependent sin 4 NA
796 194.15 wind 1.0 90 > th dose independent rect. 13 7
797 194.15 temperature 10.0 10 > th dose independent rect. 13 7
799 194.15 atmosphere 1010.0 10 < th dose independent rect. 13 7
801 194.15 temperature 10.0 10 > th dose independent rect. 20 17
802 194.15 atmosphere 995.0 10 > th dose independent rect. 20 17
803 194.15 precipitation 0.1 10 < th dose independent rect. 20 17
806 194.15 precipitation 0.1 10 < th dose dependent rect. 20 17
829 194.19 wind 9.0 720 < th dose independent rect. 19 8
840 194.20 humidity 90.0 30 > th dose dependent rect. 3 21
868 194.23 radiation 40.0 10 < th dose dependent rect. 3 23
872 194.24 temperature 10.0 10 > th dose dependent rect. 14 16
875 194.25 wind 9.0 43200 > th dose dependent rect. 13 1
891 194.26 wind 7.0 90 < th dose independent rect. 12 23
939 194.32 wind 1.0 10 > th dose independent rect. 13 7
941 194.32 wind 1.0 30 > th dose independent rect. 11 13
953 194.33 temperature 10.0 1440 > th dose independent rect. 14 7
956 194.33 temperature 10.0 1440 > th dose independent rect. 21 17
968 194.34 temperature 15.0 90 > th dose independent rect. 3 16