Os04g0295100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribonuclease P-related protein family protein.
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Os04g0295100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribonuclease P-related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.81 | 0.354 | 9.2 | 0.605 | 1.01 | -1.37 | -0.0911 | 2.41 | -0.0814 | 19.4 | -6.184 | 587 | -- | -- |
| 60.24 | 0.361 | 9.25 | 0.229 | 0.756 | -1.2 | 0.265 | -- | -0.19 | 20.3 | 13.68 | 1073 | -- | -- |
| 56.8 | 0.351 | 9.2 | 0.596 | 1.01 | -1.38 | -- | 2.39 | -0.0837 | 19.3 | 13.88 | 556 | -- | -- |
| 60.46 | 0.362 | 9.25 | 0.22 | 0.748 | -1.18 | -- | -- | -0.192 | 20.3 | 13.72 | 1082 | -- | -- |
| 82.34 | 0.423 | 9.18 | 0.643 | -- | -1 | -- | 2.24 | -0.123 | -- | 3.746 | 1359 | -- | -- |
| 81.73 | 0.424 | 9.29 | -0.119 | 0.669 | -- | 0.227 | -- | -0.394 | 19.4 | -- | -- | -- | -- |
| 81.87 | 0.424 | 9.29 | -0.124 | 0.669 | -- | -- | -- | -0.393 | 19.4 | -- | -- | -- | -- |
| 87 | 0.434 | 9.21 | 0.4 | -- | -1.05 | -- | -- | -0.125 | -- | -4.658 | 7193 | -- | -- |
| 61.57 | 0.365 | 9.25 | -- | 0.741 | -1.09 | -- | -- | -0.228 | 20.2 | 14.2 | 1080 | -- | -- |
| 105.76 | 0.481 | 9.27 | -0.135 | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
| 82.28 | 0.424 | 9.29 | -- | 0.67 | -- | -- | -- | -0.379 | 19.4 | -- | -- | -- | -- |
| 89.69 | 0.441 | 9.24 | -- | -- | -0.811 | -- | -- | -0.258 | -- | 10.23 | 2810 | -- | -- |
| 106.24 | 0.481 | 9.27 | -- | -- | -- | -- | -- | -0.389 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 4 | 55.34 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 14 | 55.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 34 | 56.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 40 | 56.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 58 | 56.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 72 | 57.14 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 91 | 57.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 106 | 57.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 110 | 57.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 119 | 57.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 134 | 57.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 136 | 57.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 166 | 57.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 178 | 57.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 193 | 57.85 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 223 | 57.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 317 | 58.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 448 | 58.41 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 455 | 58.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 477 | 58.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 629 | 58.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 771 | 58.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 860 | 59.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 946 | 59.23 | temperature | 30 | 1440 | < th | dose dependent | sin | 23 | NA |