Os04g0293700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative plant transposon protein family protein.
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Os04g0293700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative plant transposon protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.02 | 0.508 | 5.83 | -0.374 | 0.503 | 0.61 | 0.469 | 1.58 | 0.769 | 21.8 | 1014 | 7283 | -- | -- |
| 125.31 | 0.521 | 5.89 | -0.651 | 0.487 | 0.583 | 0.437 | -- | 0.693 | 21.9 | 1014 | 5256 | -- | -- |
| 117.85 | 0.506 | 5.84 | -0.399 | 0.503 | 0.61 | -- | 1.55 | 0.768 | 21.8 | 1014 | 7289 | -- | -- |
| 125.95 | 0.523 | 5.89 | -0.665 | 0.499 | 0.608 | -- | -- | 0.689 | 21.8 | 1014 | 5200 | -- | -- |
| 132.74 | 0.537 | 5.83 | -0.373 | -- | 0.602 | -- | 1.55 | 0.763 | -- | 1014 | 7538 | -- | -- |
| 138.65 | 0.552 | 5.86 | -0.591 | 0.499 | -- | 0.41 | -- | 0.789 | 21.8 | -- | -- | -- | -- |
| 139.29 | 0.553 | 5.86 | -0.607 | 0.498 | -- | -- | -- | 0.789 | 21.8 | -- | -- | -- | -- |
| 140.82 | 0.553 | 5.89 | -0.86 | -- | 0.525 | -- | -- | 0.629 | -- | 1014 | 22129 | -- | -- |
| 137.02 | 0.545 | 5.87 | -- | 0.509 | 0.616 | -- | -- | 0.774 | 21.6 | 1014 | 4506 | -- | -- |
| 154.07 | 0.58 | 5.85 | -0.602 | -- | -- | -- | -- | 0.788 | -- | -- | -- | -- | -- |
| 149 | 0.571 | 5.85 | -- | 0.496 | -- | -- | -- | 0.856 | 21.7 | -- | -- | -- | -- |
| 152.26 | 0.575 | 5.85 | -- | -- | 0.598 | -- | -- | 0.775 | -- | 1014 | 4516 | -- | -- |
| 163.62 | 0.597 | 5.83 | -- | -- | -- | -- | -- | 0.855 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.67 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 110.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 3 | 111.47 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 4 | 111.47 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 5 | 111.88 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 6 | 112.18 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 9 | 112.42 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 12 | 112.73 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 16 | 112.81 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 22 | 113.10 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 31 | 113.74 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 33 | 113.84 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 34 | 113.87 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 40 | 114.14 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 42 | 114.18 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 43 | 114.20 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 44 | 114.25 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 45 | 114.28 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 69 | 114.97 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 95 | 115.40 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 105 | 115.51 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 115 | 115.64 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 116 | 115.64 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 123 | 115.71 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 125 | 115.71 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 135 | 115.82 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 5 | 7 |
| 161 | 116.02 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 179 | 116.12 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 181 | 116.14 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 206 | 116.22 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 217 | 116.24 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 221 | 116.24 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 245 | 116.29 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 349 | 116.70 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 369 | 116.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 370 | 116.76 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 373 | 116.77 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 374 | 116.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 384 | 116.79 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 406 | 116.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 407 | 116.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 7 |
| 409 | 116.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 411 | 116.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 7 |
| 477 | 116.96 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 478 | 116.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 486 | 116.99 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 513 | 117.05 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 9 |
| 541 | 117.12 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 587 | 117.31 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 4 | NA |
| 620 | 117.45 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 637 | 117.51 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 761 | 117.73 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 764 | 117.73 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 782 | 117.76 | wind | 7.0 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 785 | 117.77 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 846 | 117.91 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 859 | 117.94 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 882 | 118.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 893 | 118.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 974 | 118.18 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |