Os04g0290800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF647 family protein.
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Os04g0290800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF647 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 238.28 | 0.725 | 2.94 | -0.048 | 0.0325 | 0.431 | 0.301 | -0.224 | -0.0343 | 10.5 | 1005 | 169 | -- | -- |
| 238.53 | 0.719 | 2.94 | -0.052 | 0.0347 | 0.428 | 0.316 | -- | -0.041 | 10.4 | 1005 | 169 | -- | -- |
| 238.62 | 0.719 | 2.94 | -0.0356 | 0.0366 | 0.426 | -- | -0.242 | -0.0342 | 12.9 | 1005 | 169 | -- | -- |
| 238.92 | 0.72 | 2.94 | -0.0375 | 0.0372 | 0.423 | -- | -- | -0.0411 | 12.6 | 1005 | 169 | -- | -- |
| 238.7 | 0.72 | 2.94 | -0.0363 | -- | 0.427 | -- | -0.241 | -0.0347 | -- | 1005 | 169 | -- | -- |
| 251.8 | 0.744 | 2.98 | -0.0349 | 0.0915 | -- | 0.189 | -- | -0.202 | 15.6 | -- | -- | -- | -- |
| 251.87 | 0.743 | 2.98 | -0.0319 | 0.0991 | -- | -- | -- | -0.201 | 16.7 | -- | -- | -- | -- |
| 239 | 0.72 | 2.94 | -0.0398 | -- | 0.423 | -- | -- | -0.0422 | -- | 1005 | 169 | -- | -- |
| 238.96 | 0.72 | 2.94 | -- | 0.0382 | 0.422 | -- | -- | -0.0375 | 12.7 | 1005 | 169 | -- | -- |
| 252.39 | 0.742 | 2.98 | -0.0357 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 251.89 | 0.742 | 2.98 | -- | 0.0997 | -- | -- | -- | -0.197 | 16.7 | -- | -- | -- | -- |
| 239.04 | 0.72 | 2.94 | -- | -- | 0.423 | -- | -- | -0.0377 | -- | 1005 | 169 | -- | -- |
| 252.42 | 0.742 | 2.98 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.14 | humidity | 60 | 90 | < th | dose independent | rect. | 12 | 4 |
| 3 | 229.85 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 6 | 230.43 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 17 |
| 12 | 231.63 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 4 | 16 |
| 37 | 232.43 | humidity | 70 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 41 | 232.60 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 11 | 19 |
| 44 | 232.74 | temperature | 30 | 90 | > th | dose independent | rect. | 12 | 1 |
| 45 | 232.79 | temperature | 30 | 30 | > th | dose independent | rect. | 12 | 3 |
| 52 | 233.08 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 11 | 9 |
| 56 | 233.23 | humidity | 60 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 68 | 233.66 | temperature | 30 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 70 | 233.67 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 1 | 19 |
| 72 | 233.73 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 5 | 1 |
| 98 | 234.03 | temperature | 30 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 128 | 234.50 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 130 | 234.50 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 7 |
| 175 | 234.59 | humidity | 60 | 10 | < th | dose dependent | rect. | 13 | 3 |
| 211 | 234.70 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 13 | 1 |
| 256 | 235.41 | radiation | 40 | 10 | < th | dose independent | sin | 12 | NA |
| 261 | 235.47 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 4 | 13 |
| 265 | 235.53 | humidity | 70 | 10 | < th | dose dependent | sin | 12 | NA |
| 270 | 235.61 | atmosphere | 1005 | 90 | < th | dose independent | sin | 22 | NA |
| 306 | 235.85 | atmosphere | 1005 | 90 | > th | dose independent | sin | 22 | NA |
| 367 | 236.25 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 403 | 236.46 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 10 | 4 |
| 408 | 236.52 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 11 | 6 |
| 553 | 237.21 | humidity | 60 | 10 | > th | dose independent | sin | 13 | NA |
| 555 | 237.22 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 565 | 237.28 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 10 | 10 |
| 616 | 237.40 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 2 | 21 |
| 618 | 237.42 | humidity | 90 | 90 | > th | dose independent | rect. | 9 | 1 |
| 619 | 237.42 | humidity | 90 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 634 | 237.51 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 21 | 23 |
| 666 | 237.64 | humidity | 60 | 10 | < th | dose independent | sin | 13 | NA |
| 667 | 237.64 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 1 | 13 |
| 692 | 237.69 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 3 | 23 |
| 693 | 237.70 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 15 |
| 705 | 237.74 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 8 | 23 |
| 778 | 238.02 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 795 | 238.03 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 10 | 23 |
| 804 | 238.06 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 842 | 238.09 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 8 | 12 |
| 912 | 238.22 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 10 | 10 |