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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0289600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Allergen V5/Tpx-1 related family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0146) R2 : 0.000587
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0159 (0.0308) R2dN8 : 0.000758 R2N8 : 0.000587
σ : 0.275
deviance : 34.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.98 0.262 2.91 -0.0874 0.151 -0.0424 -0.725 0.847 -0.0132 9.46 20.22 103 -- --
32.73 0.266 2.92 -0.0997 0.17 -0.0633 -0.298 -- -0.0264 9.32 25.23 50 -- --
32.3 0.265 2.92 -0.133 0.167 -0.0527 -- 0.523 -0.0204 9.41 29.64 143 -- --
32.89 0.267 2.92 -0.115 0.183 -0.1 -- -- -0.0392 9.52 35.13 53 -- --
33.68 0.27 2.92 -0.128 -- 0.0105 -- 0.51 -0.0292 -- 29.7 148 -- --
32.79 0.268 2.92 -0.102 0.143 -- -0.413 -- -0.0304 8.11 -- -- -- --
33.18 0.27 2.92 -0.112 0.146 -- -- -- -0.029 9.32 -- -- -- --
34.4 0.274 2.92 -0.114 -- 0.024 -- -- -0.029 -- 30.27 171 -- --
33.22 0.268 2.91 -- 0.176 -0.111 -- -- -0.00908 9.84 35.12 62 -- --
34.43 0.274 2.92 -0.112 -- -- -- -- -0.0284 -- -- -- -- --
33.51 0.271 2.91 -- 0.147 -- -- -- -0.0165 9.38 -- -- -- --
34.72 0.275 2.92 -- -- 0.0346 -- -- -0.0155 -- 44.48 75 -- --
34.77 0.275 2.92 -- -- -- -- -- -0.0159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.31 radiation 1 270 > th dose independent rect. 4 1
11 22.31 radiation 1 270 > th dose dependent rect. 4 1
21 24.96 humidity 90 30 < th dose independent rect. 5 1
56 26.11 atmosphere 1005 30 > th dose dependent rect. 5 1
70 26.65 humidity 90 10 < th dose dependent rect. 5 1
100 27.27 humidity 80 10 < th dose dependent rect. 1 5
102 27.29 humidity 80 10 < th dose independent rect. 1 5
146 27.36 temperature 20 270 < th dose independent rect. 4 1
152 27.72 temperature 20 90 < th dose dependent rect. 4 1
159 28.11 atmosphere 1005 30 > th dose independent rect. 5 1
163 28.16 radiation 1 10 < th dose dependent rect. 6 1
176 28.37 temperature 20 90 < th dose dependent rect. 4 7
185 28.61 atmosphere 1005 10 > th dose independent rect. 5 3
187 28.62 temperature 25 90 < th dose dependent rect. 4 3
191 28.70 radiation 1 10 < th dose independent rect. 6 1
257 29.30 radiation 10 30 < th dose independent sin 11 NA
260 29.32 humidity 80 720 > th dose independent rect. 22 6
263 29.33 temperature 15 270 > th dose independent rect. 6 11
308 29.48 humidity 80 270 < th dose independent rect. 24 6
310 29.48 humidity 80 270 < th dose dependent rect. 24 6
316 29.51 humidity 80 270 < th dose independent rect. 24 3
319 29.51 humidity 80 270 < th dose dependent rect. 24 3
397 29.71 temperature 25 10 < th dose independent rect. 5 3
430 29.79 temperature 25 10 < th dose dependent rect. 4 8
432 29.80 wind 1 270 < th dose independent rect. 5 1
450 29.85 wind 3 10 < th dose independent rect. 5 3
471 29.89 temperature 20 90 < th dose independent rect. 4 8
487 29.93 temperature 15 720 > th dose independent rect. 6 5
488 29.93 temperature 15 90 > th dose independent rect. 8 11
502 29.97 humidity 70 720 > th dose dependent rect. 23 2
520 30.00 humidity 90 90 < th dose independent rect. 8 11
549 30.07 temperature 25 90 < th dose dependent sin 4 NA
557 30.08 humidity 80 30 > th dose independent rect. 5 7
576 30.12 humidity 90 90 < th dose independent rect. 8 9
584 30.13 wind 5 10 < th dose dependent rect. 5 3
621 30.17 atmosphere 1015 720 < th dose independent rect. 23 19
629 30.18 wind 7 30 < th dose independent rect. 8 21
654 30.21 humidity 90 90 < th dose independent rect. 8 7
670 30.23 radiation 30 90 < th dose independent rect. 4 9
680 30.24 temperature 25 10 < th dose independent rect. 6 1
682 30.24 humidity 80 720 > th dose independent rect. 23 2
715 30.28 temperature 15 90 > th dose independent rect. 8 20
737 30.30 wind 1 10 < th dose dependent rect. 6 1
745 30.31 wind 9 10 < th dose independent rect. 6 23
759 30.32 atmosphere 1005 10 > th dose dependent rect. 2 6
781 30.34 humidity 80 720 < th dose independent rect. 21 9
787 30.35 humidity 80 720 < th dose independent rect. 21 6
788 30.35 temperature 20 10 < th dose independent rect. 5 7
836 30.39 humidity 70 10 > th dose independent rect. 5 3
838 30.39 radiation 30 10 < th dose independent rect. 5 3
856 30.41 temperature 30 10 < th dose independent rect. 8 21
857 30.41 wind 3 270 < th dose dependent rect. 5 1
862 30.42 wind 9 4320 < th dose independent rect. 6 1
867 30.42 atmosphere 1005 30 > th dose independent rect. 5 8
876 30.43 atmosphere 1015 720 < th dose independent rect. 23 11
884 30.44 wind 5 30 < th dose independent rect. 5 1
885 30.44 wind 3 720 < th dose independent rect. 23 2
893 30.44 radiation 30 90 < th dose independent rect. 4 11
948 30.48 humidity 50 720 > th dose dependent rect. 21 6
954 30.49 humidity 90 30 < th dose independent rect. 8 4
968 30.49 wind 5 10 < th dose dependent rect. 5 1
978 30.50 radiation 10 30 < th dose dependent sin 11 NA