Os04g0289500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Allergen V5/Tpx-1 related family protein.
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Os04g0289500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Allergen V5/Tpx-1 related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 231.27 | 0.715 | 3.63 | 1.09 | 0.384 | 2.01 | 1.28 | 0.43 | -0.202 | 9.62 | 23.67 | 623 | -- | -- |
| 231.46 | 0.709 | 3.62 | 1.14 | 0.392 | 1.96 | 1.37 | -- | -0.196 | 9.62 | 23.6 | 613 | -- | -- |
| 236.56 | 0.716 | 3.64 | 1.05 | 0.381 | 2.09 | -- | 1.05 | -0.227 | 9.74 | 23.4 | 610 | -- | -- |
| 238.39 | 0.719 | 3.62 | 1.19 | 0.39 | 1.94 | -- | -- | -0.193 | 9.48 | 23.67 | 609 | -- | -- |
| 244.23 | 0.728 | 3.65 | 1.03 | -- | 2.34 | -- | 1.46 | -0.207 | -- | 23.4 | 648 | -- | -- |
| 283.35 | 0.789 | 3.69 | 0.635 | 0.595 | -- | 1.28 | -- | -0.536 | 9.49 | -- | -- | -- | -- |
| 289.36 | 0.797 | 3.69 | 0.682 | 0.591 | -- | -- | -- | -0.535 | 9.39 | -- | -- | -- | -- |
| 246.67 | 0.731 | 3.62 | 1.24 | -- | 2.09 | -- | -- | -0.155 | -- | 23.8 | 652 | -- | -- |
| 271.25 | 0.767 | 3.67 | -- | 0.452 | 1.42 | -- | -- | -0.401 | 9.34 | 23.7 | 584 | -- | -- |
| 309.83 | 0.822 | 3.71 | 0.679 | -- | -- | -- | -- | -0.533 | -- | -- | -- | -- | -- |
| 301.62 | 0.812 | 3.71 | -- | 0.591 | -- | -- | -- | -0.611 | 9.3 | -- | -- | -- | -- |
| 282.27 | 0.782 | 3.67 | -- | -- | 1.56 | -- | -- | -0.372 | -- | 23.83 | 633 | -- | -- |
| 321.98 | 0.838 | 3.73 | -- | -- | -- | -- | -- | -0.608 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 231.03 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 2 | 231.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 4 | 231.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 7 | 231.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 7 |
| 21 | 232.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 25 | 232.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 33 | 232.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 80 | 234.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 143 | 235.17 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 147 | 235.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 175 | 235.70 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 178 | 235.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 323 | 239.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 463 | 242.80 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 579 | 244.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 607 | 244.81 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 18 |
| 636 | 245.02 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 22 |
| 637 | 245.02 | temperature | 25 | 1440 | < th | dose dependent | sin | 19 | NA |
| 673 | 245.29 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 21 |
| 686 | 245.36 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 700 | 245.43 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 763 | 245.69 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 779 | 245.72 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 789 | 245.76 | temperature | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 801 | 245.79 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 853 | 246.00 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 862 | 246.03 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 928 | 246.23 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 994 | 246.41 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |