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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0288500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.01 (0.0824) R2 : 0.719
β1 : 8.88 (0.311) R2dD : 0.555 R2D : 0.224
β2 : 2.24 (0.201) R2dC : 0.0782 R2C : -0.016
β3 : -4.04 (0.238) R2dE : 0.195 R2E : -0.0552
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.1 (0.176) R2dN8 : 0.257 R2N8 : 0.0879
σ : 1.54
deviance : 1095.27
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_____
C
peak time of C : 1.18
E
wheather : temperature
threshold : 26.7
memory length : 1274
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1086.76 1.55 5.96 9.39 2.24 -4.27 1.32 1.95 3.19 1.09 26.71 1267 12.8 --
1087.64 1.54 6.02 8.95 2.24 -4.08 1.33 -- 3.1 1.11 26.7 1264 12.6 --
1093.66 1.54 5.95 9.45 2.22 -4.28 -- 2.44 3.21 1.16 26.7 1271 12.7 --
1095.27 1.54 6.01 8.88 2.24 -4.04 -- -- 3.1 1.18 26.7 1274 12.8 --
1310.14 1.69 5.89 9.54 -- -4.49 -- 2.82 3.36 -- 26.55 1628 12.8 --
1779.75 1.98 6.03 7.65 1.55 -- 0.489 -- 3.06 0.668 -- -- -- --
1780.73 1.98 6.03 7.63 1.55 -- -- -- 3.06 0.738 -- -- -- --
1310.55 1.69 5.97 8.94 -- -4.19 -- -- 3.23 -- 26.5 1625 12.7 --
3022.63 2.56 6.4 -- 1.92 -2.41 -- -- 1.78 1.09 31.96 1273 21.4 --
1931.85 2.05 6 7.69 -- -- -- -- 3.09 -- -- -- -- --
3314.77 2.69 6.22 -- 1.68 -- -- -- 2.21 0.949 -- -- -- --
3246.7 2.65 6.28 -- -- -2.62 -- -- 1.87 -- 28.42 1673 7.48 --
3489.84 2.76 6.19 -- -- -- -- -- 2.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1116.53 temperature 25 1440 > th dose dependent rect. 13 6
6 1120.40 temperature 30 1440 > th dose dependent rect. 14 2
27 1123.36 temperature 25 1440 > th dose dependent sin 19 NA
139 1127.77 wind 5 43200 > th dose independent rect. 6 1
167 1128.62 wind 5 43200 < th dose independent rect. 6 1
242 1130.19 wind 9 43200 < th dose independent rect. 19 11
325 1131.98 temperature 30 1440 > th dose dependent no NA NA
438 1132.37 wind 9 43200 > th dose independent rect. 19 11
440 1132.48 humidity 70 14400 < th dose independent rect. 18 13
460 1133.26 humidity 70 14400 < th dose independent rect. 18 4
485 1134.15 humidity 70 14400 > th dose independent rect. 18 13
506 1134.63 humidity 70 14400 > th dose independent rect. 18 6
512 1134.73 humidity 70 14400 > th dose independent rect. 18 11
513 1134.75 humidity 70 14400 > th dose independent rect. 18 9
586 1140.62 wind 5 43200 < th dose independent sin 4 NA
600 1141.61 wind 3 43200 > th dose dependent rect. 5 5
605 1142.22 wind 5 43200 > th dose independent sin 4 NA
622 1144.12 wind 5 43200 < th dose independent rect. 9 1
626 1144.51 wind 3 43200 > th dose dependent rect. 6 2
627 1144.53 wind 9 43200 > th dose dependent rect. 20 10
629 1144.83 wind 3 43200 > th dose dependent sin 5 NA
638 1145.75 wind 5 43200 < th dose independent rect. 17 20
640 1145.92 wind 5 43200 > th dose independent rect. 9 1
645 1146.26 wind 5 43200 > th dose independent rect. 17 20
647 1146.70 wind 3 43200 > th dose dependent rect. 5 7
648 1146.71 wind 5 43200 > th dose dependent rect. 17 20
660 1147.55 radiation 20 1440 < th dose independent rect. 16 15
669 1148.52 wind 3 43200 > th dose dependent rect. 3 11
720 1150.47 wind 5 43200 < th dose independent rect. 5 7
721 1150.47 humidity 70 14400 < th dose dependent rect. 18 1
733 1151.38 radiation 20 1440 > th dose independent rect. 16 15
754 1152.76 temperature 30 1440 < th dose independent rect. 9 22
757 1152.77 temperature 30 1440 < th dose independent rect. 9 15
761 1152.82 temperature 30 1440 < th dose independent rect. 9 20
762 1152.83 temperature 30 1440 < th dose independent rect. 9 10
767 1152.91 temperature 30 1440 < th dose independent rect. 9 18
772 1153.27 wind 5 43200 > th dose independent rect. 5 7
785 1153.85 radiation 20 1440 < th dose independent rect. 16 1
792 1154.27 temperature 30 14400 > th dose dependent rect. 14 5
811 1154.52 radiation 20 1440 < th dose independent rect. 16 8
827 1154.69 temperature 30 14400 > th dose dependent sin 13 NA
835 1155.30 wind 3 43200 > th dose dependent rect. 24 14
836 1155.33 temperature 30 1440 > th dose independent rect. 9 10
857 1155.49 temperature 30 1440 < th dose independent sin 17 NA
862 1155.59 temperature 30 1440 > th dose independent sin 16 NA
900 1156.13 wind 3 43200 > th dose dependent rect. 19 15
918 1156.40 radiation 20 1440 < th dose independent rect. 16 13
964 1157.34 temperature 30 14400 > th dose dependent rect. 14 2
985 1157.53 temperature 30 1440 < th dose independent rect. 17 20
986 1157.55 temperature 30 1440 > th dose independent rect. 16 3