Os04g0288100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenosine diphosphate glucose pyrophosphatase precursor.
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Os04g0288100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenosine diphosphate glucose pyrophosphatase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 563.29 | 1.12 | 6.27 | 4.21 | 1.41 | -0.806 | 0.92 | 9.91 | 2.94 | 2.14 | 1000 | 16022 | -- | -- |
| 632.95 | 1.17 | 6.37 | 4.06 | 1.3 | 1.24 | 0.98 | -- | 3.14 | 2.17 | 999 | 11751 | -- | -- |
| 564.72 | 1.11 | 6.25 | 4.3 | 1.43 | -0.857 | -- | 10.2 | 2.98 | 1.97 | 1000 | 15139 | -- | -- |
| 613.87 | 1.15 | 6.38 | 3.98 | 1.52 | 1.64 | -- | -- | 3.28 | 1.88 | 1004 | 11465 | -- | -- |
| 687.69 | 1.22 | 6.24 | 4.41 | -- | -0.96 | -- | 10.7 | 3.02 | -- | 1000 | 15139 | -- | -- |
| 673.37 | 1.22 | 6.39 | 4.18 | 1.46 | -- | 0.666 | -- | 3.06 | 2.11 | -- | -- | -- | -- |
| 674.95 | 1.22 | 6.39 | 4.16 | 1.46 | -- | -- | -- | 3.05 | 2 | -- | -- | -- | -- |
| 737.6 | 1.26 | 6.32 | 4 | -- | 1.86 | -- | -- | 3.41 | -- | 1004 | 11125 | -- | -- |
| 697.85 | 1.23 | 6.48 | -- | 1.41 | 3.3 | -- | -- | 1.88 | 2.12 | 1013 | 47520 | -- | -- |
| 802.82 | 1.32 | 6.38 | 4.22 | -- | -- | -- | -- | 3.09 | -- | -- | -- | -- | -- |
| 1131.09 | 1.57 | 6.5 | -- | 1.54 | -- | -- | -- | 2.59 | 2.06 | -- | -- | -- | -- |
| 800.92 | 1.32 | 6.69 | -- | -- | 3.46 | -- | -- | 1.71 | -- | 1013 | 47520 | -- | -- |
| 1272.72 | 1.67 | 6.48 | -- | -- | -- | -- | -- | 2.62 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 555.50 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 5 | 557.80 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 32 | 558.61 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 44 | 558.88 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 49 | 558.98 | atmosphere | 1000 | 14400 | > th | dose independent | sin | 16 | NA |
| 108 | 559.79 | atmosphere | 1000 | 14400 | < th | dose independent | sin | 16 | NA |
| 142 | 560.13 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 144 | 560.15 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 158 | 560.31 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 170 | 560.39 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 216 | 560.78 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 235 | 560.93 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 241 | 560.98 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 336 | 561.83 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 365 | 562.01 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 523 | 563.46 | atmosphere | 1000 | 14400 | > th | dose independent | no | NA | NA |
| 561 | 563.72 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 574 | 563.80 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 618 | 564.20 | atmosphere | 1000 | 14400 | < th | dose independent | no | NA | NA |
| 645 | 564.42 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 753 | 565.43 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 17 | NA |
| 754 | 565.43 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 758 | 565.47 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 773 | 565.60 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 787 | 565.68 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 845 | 566.04 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 937 | 566.57 | atmosphere | 1000 | 14400 | > th | dose dependent | sin | 8 | NA |