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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0288000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0235) R2 : 7.44e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00913 (0.0496) R2dN8 : 9.61e-05 R2N8 : 7.44e-05
σ : 0.443
deviance : 90.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.43 0.437 3.32 0.0334 0.0725 0.36 0.217 1.61 0.0351 9.12 998.6 5775 -- --
87.78 0.436 3.33 0.00994 0.0794 0.297 0.212 -- 0.0422 8.75 1001 6381 -- --
86.49 0.433 3.32 0.0402 0.0871 0.371 -- 1.65 0.034 7.16 998.5 5761 -- --
87.86 0.437 3.33 0.0119 0.0909 0.295 -- -- 0.0396 7.16 1001 6373 -- --
86.89 0.434 3.32 0.041 -- 0.379 -- 1.67 0.0357 -- 998.5 5750 -- --
89.62 0.444 3.33 0.04 0.0785 -- 0.234 -- 0.0138 9.08 -- -- -- --
89.71 0.444 3.33 0.0464 0.0918 -- -- -- 0.0129 7.27 -- -- -- --
88.3 0.438 3.33 0.014 -- 0.296 -- -- 0.0412 -- 1001 6457 -- --
87.87 0.437 3.33 -- 0.0908 0.297 -- -- 0.0382 7.13 1001 6373 -- --
90.16 0.444 3.33 0.048 -- -- -- -- 0.0145 -- -- -- -- --
89.77 0.443 3.33 -- 0.0923 -- -- -- 0.00773 7.24 -- -- -- --
88.3 0.438 3.33 -- -- 0.298 -- -- 0.0398 -- 1001 6455 -- --
90.22 0.443 3.34 -- -- -- -- -- 0.00913 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.88 radiation 1.0 43200 < th dose dependent rect. 3 1
2 82.00 wind 1.0 10 < th dose dependent rect. 2 1
3 82.08 atmosphere 1000.0 30 > th dose independent rect. 3 23
4 82.10 atmosphere 1005.0 90 > th dose dependent rect. 2 1
7 82.45 wind 1.0 10 < th dose independent rect. 13 14
8 82.47 wind 1.0 10 < th dose independent rect. 11 16
16 82.62 atmosphere 1005.0 10 > th dose dependent rect. 2 2
17 82.64 wind 1.0 10 < th dose independent rect. 2 1
21 82.70 temperature 20.0 10 > th dose dependent rect. 2 1
25 82.72 temperature 25.0 90 > th dose dependent rect. 2 1
26 82.72 atmosphere 1015.0 10 < th dose dependent rect. 2 1
28 82.73 temperature 25.0 90 > th dose independent rect. 2 1
32 82.77 temperature 20.0 10 > th dose independent rect. 2 1
40 82.79 humidity 90.0 10 > th dose independent rect. 2 1
56 82.83 atmosphere 1005.0 30 > th dose independent rect. 2 1
60 82.84 temperature 10.0 10 > th dose independent rect. 2 1
64 82.84 temperature 30.0 10 < th dose independent rect. 2 1
66 82.84 humidity 50.0 10 > th dose independent rect. 2 1
72 82.84 atmosphere 995.0 10 > th dose independent rect. 2 1
74 82.84 atmosphere 1010.0 10 < th dose independent rect. 2 1
78 82.84 radiation 1.0 10 < th dose independent rect. 2 1
88 82.84 precipitation 0.1 10 < th dose independent rect. 2 1
90 82.84 temperature 10.0 10 > th dose independent rect. 3 23
92 82.84 temperature 30.0 10 < th dose dependent rect. 2 1
93 82.84 humidity 50.0 30 > th dose dependent rect. 2 1
96 82.84 radiation 1.0 10 < th dose dependent rect. 2 1
109 82.84 precipitation 0.1 10 < th dose dependent rect. 2 1
111 82.84 temperature 25.0 90 > th dose dependent rect. 1 3
112 82.85 wind 9.0 1440 < th dose independent rect. 3 1
113 82.85 temperature 10.0 1440 > th dose independent rect. 3 1
117 82.85 temperature 30.0 1440 < th dose independent rect. 3 1
122 82.85 humidity 50.0 1440 > th dose independent rect. 3 1
132 82.85 atmosphere 995.0 1440 > th dose independent rect. 3 1
133 82.85 radiation 1.0 1440 < th dose independent rect. 3 1
153 82.85 temperature 10.0 1440 > th dose independent rect. 4 23
159 82.85 atmosphere 995.0 30 > th dose dependent rect. 2 1
180 82.96 precipitation 0.1 30 < th dose independent rect. 3 23
181 82.96 precipitation 0.1 30 < th dose dependent rect. 3 23
182 83.01 wind 1.0 30 > th dose independent rect. 2 1
191 83.21 wind 1.0 10 < th dose independent rect. 8 19
194 83.25 wind 1.0 10 < th dose independent rect. 17 10
196 83.26 wind 1.0 10 < th dose independent rect. 21 6
211 83.42 wind 9.0 30 < th dose independent rect. 3 23
214 83.52 wind 1.0 10 > th dose independent rect. 21 23
217 83.57 atmosphere 1000.0 30 > th dose independent rect. 21 23
223 83.80 temperature 30.0 720 < th dose independent rect. 15 6
230 83.94 temperature 30.0 720 < th dose independent rect. 18 9
231 83.97 temperature 25.0 90 > th dose independent rect. 20 1
233 83.97 temperature 20.0 30 > th dose dependent rect. 20 7
240 84.16 temperature 25.0 30 > th dose dependent rect. 20 3
243 84.20 radiation 1.0 43200 < th dose dependent rect. 21 1
244 84.21 wind 1.0 10 > th dose independent sin 18 NA
249 84.25 radiation 10.0 4320 < th dose dependent rect. 21 1
260 84.29 atmosphere 1005.0 10 > th dose independent rect. 20 1
265 84.29 wind 1.0 30 < th dose dependent rect. 11 16
268 84.30 humidity 50.0 30 > th dose independent rect. 3 23
271 84.31 temperature 10.0 1440 > th dose independent rect. 21 1
274 84.31 temperature 30.0 1440 < th dose independent rect. 21 1
278 84.31 humidity 50.0 1440 > th dose independent rect. 21 1
284 84.31 atmosphere 995.0 1440 > th dose independent rect. 21 1
285 84.31 radiation 1.0 1440 < th dose independent rect. 21 1
305 84.31 temperature 10.0 1440 > th dose independent rect. 22 23
308 84.31 temperature 30.0 30 < th dose dependent rect. 20 1
309 84.32 humidity 90.0 90 < th dose independent rect. 2 1
313 84.33 wind 5.0 30 < th dose independent rect. 20 1
315 84.33 humidity 90.0 90 < th dose independent rect. 1 4
316 84.33 atmosphere 1000.0 30 > th dose dependent rect. 20 1
322 84.34 wind 3.0 30 > th dose independent rect. 20 1
324 84.34 humidity 80.0 30 > th dose independent rect. 20 1
325 84.34 humidity 90.0 30 < th dose independent rect. 20 1
332 84.35 temperature 10.0 30 > th dose independent rect. 20 1
335 84.35 temperature 30.0 30 < th dose independent rect. 20 1
336 84.35 humidity 50.0 30 > th dose independent rect. 20 1
339 84.35 atmosphere 995.0 30 > th dose independent rect. 20 1
341 84.35 atmosphere 1010.0 30 < th dose independent rect. 20 1
343 84.35 radiation 1.0 30 < th dose independent rect. 20 1
348 84.35 precipitation 0.1 30 < th dose independent rect. 20 1
350 84.35 temperature 10.0 30 > th dose independent rect. 21 23
351 84.35 wind 1.0 30 > th dose dependent rect. 20 1
352 84.35 wind 7.0 30 < th dose dependent rect. 20 1
354 84.35 humidity 50.0 30 > th dose dependent rect. 20 1
355 84.35 humidity 90.0 30 < th dose dependent rect. 20 1
356 84.35 radiation 1.0 30 < th dose dependent rect. 20 1
361 84.35 precipitation 0.1 30 < th dose dependent rect. 20 1
362 84.36 wind 9.0 720 < th dose independent rect. 15 6
363 84.36 temperature 10.0 30 > th dose dependent rect. 20 1
366 84.36 wind 1.0 30 < th dose dependent rect. 13 14
376 84.38 atmosphere 1015.0 30 < th dose dependent rect. 20 1
441 84.56 precipitation 0.1 30 < th dose independent rect. 21 23
443 84.56 precipitation 0.1 30 < th dose dependent rect. 21 23
449 84.62 atmosphere 1000.0 720 > th dose independent rect. 3 6
454 84.64 wind 9.0 30 < th dose independent rect. 21 23
480 84.80 wind 1.0 10 < th dose independent sin 18 NA
481 84.80 temperature 20.0 30 > th dose dependent rect. 20 10
482 84.82 temperature 25.0 720 > th dose independent rect. 3 6
483 84.84 temperature 25.0 720 > th dose dependent rect. 3 5
485 84.85 temperature 25.0 270 > th dose independent rect. 17 10
489 84.87 atmosphere 995.0 720 > th dose independent rect. 21 18
505 84.93 temperature 30.0 720 < th dose independent rect. 15 15
510 84.95 precipitation 0.1 720 < th dose independent rect. 3 6
514 84.95 precipitation 0.1 720 < th dose dependent rect. 3 6
516 84.96 temperature 25.0 720 > th dose independent rect. 4 4
563 84.99 humidity 60.0 720 > th dose independent rect. 3 6
583 85.02 wind 7.0 4320 > th dose independent rect. 21 1
584 85.03 wind 9.0 720 < th dose independent rect. 3 6
585 85.03 temperature 10.0 720 > th dose independent rect. 3 6
588 85.03 wind 1.0 10 > th dose independent rect. 14 12
589 85.03 temperature 10.0 720 > th dose independent rect. 9 18
590 85.04 temperature 10.0 720 > th dose independent rect. 15 6
591 85.04 temperature 10.0 720 > th dose independent rect. 21 18
595 85.06 humidity 50.0 720 > th dose independent rect. 15 6
600 85.09 wind 1.0 30 < th dose dependent rect. 21 6
609 85.13 precipitation 0.1 720 < th dose independent rect. 15 6
610 85.13 precipitation 0.1 720 < th dose dependent rect. 15 6
613 85.15 precipitation 0.1 720 < th dose independent rect. 21 18
615 85.15 precipitation 0.1 720 < th dose dependent rect. 21 18
617 85.16 precipitation 0.1 720 < th dose independent rect. 9 18
618 85.16 precipitation 0.1 720 < th dose dependent rect. 9 18
628 85.21 atmosphere 1015.0 720 < th dose independent rect. 15 6
629 85.21 atmosphere 1000.0 10 > th dose independent rect. 2 12
631 85.23 humidity 90.0 720 < th dose independent rect. 24 5
634 85.24 humidity 90.0 720 < th dose independent rect. 2 2
638 85.25 temperature 30.0 720 < th dose independent rect. 3 6
642 85.26 atmosphere 1015.0 720 < th dose independent rect. 3 6
646 85.27 wind 5.0 4320 > th dose dependent rect. 21 1
649 85.28 wind 1.0 720 > th dose independent rect. 15 6
658 85.32 wind 9.0 720 < th dose independent rect. 9 18
660 85.34 wind 7.0 4320 < th dose independent rect. 21 1
663 85.35 humidity 80.0 1440 > th dose dependent rect. 2 1
665 85.36 radiation 1.0 720 < th dose independent rect. 18 9
673 85.38 atmosphere 995.0 720 > th dose independent rect. 15 6
679 85.41 atmosphere 995.0 720 > th dose independent rect. 9 18
702 85.50 temperature 30.0 720 < th dose independent rect. 15 22
703 85.50 humidity 50.0 30 > th dose independent rect. 21 23
706 85.51 precipitation 0.1 4320 > th dose dependent rect. 20 1
707 85.51 radiation 1.0 720 < th dose dependent rect. 18 9
708 85.52 precipitation 0.1 1440 < th dose independent rect. 21 1
709 85.52 wind 1.0 10 > th dose independent rect. 23 21
710 85.52 precipitation 0.1 1440 < th dose dependent rect. 21 1
713 85.53 atmosphere 1000.0 10 > th dose independent rect. 14 12
718 85.55 humidity 70.0 720 > th dose independent rect. 18 9
719 85.55 atmosphere 995.0 90 > th dose independent rect. 14 11
721 85.56 temperature 20.0 30 > th dose independent rect. 3 17
733 85.59 radiation 40.0 720 < th dose independent rect. 15 6
735 85.59 humidity 50.0 720 > th dose independent rect. 9 18
741 85.62 humidity 90.0 4320 < th dose independent rect. 3 6
742 85.62 radiation 1.0 14400 < th dose dependent rect. 22 5
745 85.63 wind 5.0 14400 < th dose independent rect. 10 5
754 85.65 radiation 40.0 30 < th dose independent rect. 14 12
756 85.66 humidity 90.0 720 > th dose independent rect. 3 1
757 85.66 wind 9.0 720 < th dose dependent rect. 2 1
759 85.66 humidity 80.0 14400 < th dose dependent rect. 3 6
762 85.67 wind 5.0 14400 > th dose independent rect. 10 5
771 85.69 temperature 30.0 720 < th dose independent rect. 15 12
772 85.69 humidity 50.0 720 > th dose independent rect. 21 18
805 85.75 temperature 20.0 30 > th dose dependent rect. 3 6
809 85.76 wind 9.0 720 < th dose independent rect. 15 22
811 85.76 temperature 10.0 30 > th dose dependent rect. 3 17
818 85.78 humidity 70.0 720 > th dose independent rect. 17 4
823 85.79 temperature 25.0 720 > th dose independent rect. 18 1
832 85.81 atmosphere 995.0 720 > th dose independent rect. 13 2
833 85.81 radiation 1.0 14400 < th dose dependent rect. 24 2
837 85.82 humidity 90.0 4320 > th dose independent rect. 3 6
839 85.82 humidity 50.0 720 > th dose independent rect. 15 22
880 85.85 temperature 10.0 10 > th dose independent rect. 2 12
882 85.85 temperature 10.0 10 > th dose independent rect. 14 12
884 85.85 atmosphere 1015.0 10 < th dose independent rect. 2 12
886 85.85 atmosphere 995.0 720 > th dose independent rect. 3 22
899 85.86 wind 5.0 4320 > th dose dependent rect. 20 5
905 85.87 atmosphere 1000.0 720 > th dose independent rect. 21 12
906 85.87 precipitation 0.1 10 < th dose independent rect. 2 12
909 85.87 precipitation 0.1 10 < th dose dependent rect. 2 12
912 85.88 precipitation 0.1 90 < th dose independent rect. 1 13
918 85.88 precipitation 0.1 90 < th dose dependent rect. 1 13
920 85.89 wind 7.0 720 < th dose independent rect. 1 2
921 85.89 precipitation 0.1 720 < th dose independent rect. 13 2
922 85.89 humidity 50.0 90 > th dose independent rect. 1 13
923 85.89 precipitation 0.1 720 < th dose dependent rect. 13 2
934 85.91 atmosphere 1000.0 90 > th dose independent rect. 3 16
941 85.92 temperature 10.0 720 > th dose independent rect. 1 2
942 85.92 temperature 10.0 720 > th dose independent rect. 13 2
943 85.92 temperature 30.0 720 < th dose independent rect. 1 2
944 85.92 humidity 50.0 720 > th dose independent rect. 1 2
947 85.92 atmosphere 995.0 720 > th dose independent rect. 1 2
948 85.92 atmosphere 1015.0 720 < th dose independent rect. 13 2
949 85.92 radiation 1.0 720 < th dose independent rect. 1 2
956 85.92 temperature 10.0 720 > th dose independent rect. 15 22
957 85.92 radiation 1.0 720 < th dose dependent rect. 1 2
964 85.93 wind 5.0 14400 < th dose independent rect. 11 1
966 85.93 temperature 25.0 720 > th dose independent rect. 18 3
969 85.93 precipitation 0.1 10 < th dose independent rect. 14 12
971 85.93 precipitation 0.1 10 < th dose dependent rect. 14 12
979 85.95 precipitation 0.1 720 < th dose independent rect. 1 2
981 85.95 humidity 60.0 10 > th dose independent rect. 14 12
988 85.95 precipitation 0.1 720 < th dose dependent rect. 1 2