Os04g0287400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 51.
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Os04g0287400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 51.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.27 | 0.283 | 11.8 | 1.03 | 0.556 | -0.365 | -0.0322 | -0.589 | 0.216 | 7.36 | 22.1 | 1479 | -- | -- |
| 37.08 | 0.284 | 11.8 | 1.23 | 0.558 | -0.354 | -0.0614 | -- | 0.267 | 7.37 | 22.1 | 1501 | -- | -- |
| 36.27 | 0.28 | 11.8 | 1.03 | 0.556 | -0.365 | -- | -0.588 | 0.216 | 7.37 | 22.11 | 1485 | -- | -- |
| 37.08 | 0.284 | 11.8 | 1.23 | 0.552 | -0.36 | -- | -- | 0.264 | 7.38 | 22.18 | 1501 | -- | -- |
| 46.42 | 0.317 | 11.8 | 1.17 | -- | -0.35 | -- | -0.245 | 0.218 | -- | 25.9 | 390 | -- | -- |
| 41.73 | 0.303 | 11.8 | 1.09 | 0.548 | -- | -0.0471 | -- | 0.144 | 7.44 | -- | -- | -- | -- |
| 41.74 | 0.303 | 11.8 | 1.09 | 0.548 | -- | -- | -- | 0.144 | 7.44 | -- | -- | -- | -- |
| 45.5 | 0.314 | 11.8 | 1.24 | -- | -0.478 | -- | -- | 0.294 | -- | 25.86 | 543 | -- | -- |
| 72.9 | 0.4 | 11.8 | -- | 0.565 | -0.0726 | -- | -- | 0.041 | 7.49 | 22.18 | 1501 | -- | -- |
| 57.75 | 0.355 | 11.8 | 1.1 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 73.21 | 0.4 | 11.8 | -- | 0.558 | -- | -- | -- | 0.0222 | 7.31 | -- | -- | -- | -- |
| 69.87 | 0.389 | 11.9 | -- | -- | 0.687 | -- | -- | -0.152 | -- | 19.17 | 47520 | -- | -- |
| 89.74 | 0.442 | 11.8 | -- | -- | -- | -- | -- | 0.0304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 2 | 36.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 15 | 36.35 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 18 | 36.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 20 | 36.40 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 22 | 36.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 24 | 36.43 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 27 | 36.45 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 49 | 36.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 56 | 36.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 66 | 36.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 78 | 36.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 79 | 36.62 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 127 | 36.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 148 | 36.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 155 | 36.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 161 | 36.74 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 177 | 36.75 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 186 | 36.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 200 | 36.78 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 234 | 36.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 241 | 36.85 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 262 | 36.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 282 | 36.89 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 310 | 36.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 318 | 36.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 413 | 36.99 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 439 | 37.00 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 473 | 37.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 475 | 37.02 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 700 | 37.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 775 | 37.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 838 | 37.20 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 881 | 37.22 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 901 | 37.23 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 924 | 37.24 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 928 | 37.24 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 21 |
| 985 | 37.27 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 990 | 37.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 20 |