Os04g0286300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EGF-like calcium-binding domain containing protein.
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Os04g0286300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EGF-like calcium-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.44 | 0.444 | 10.3 | -0.0137 | 0.221 | 0.919 | -1.54 | -4.62 | 0.422 | 7.88 | 25.14 | 4347 | -- | -- |
| 92.61 | 0.448 | 10.2 | 0.954 | 0.231 | 0.673 | -1.46 | -- | 0.529 | 7.84 | 17.96 | 3965 | -- | -- |
| 95.61 | 0.455 | 10.3 | -0.0354 | 0.253 | 0.898 | -- | -4.55 | 0.43 | 6.15 | 25.13 | 4425 | -- | -- |
| 99.07 | 0.464 | 10.2 | 0.913 | 0.24 | 0.656 | -- | -- | 0.545 | 6.66 | 18 | 3979 | -- | -- |
| 98.93 | 0.463 | 10.3 | -0.0166 | -- | 0.883 | -- | -4.39 | 0.428 | -- | 24.9 | 4392 | -- | -- |
| 102.63 | 0.475 | 10.2 | 1.26 | 0.211 | -- | -1.55 | -- | 0.683 | 7.76 | -- | -- | -- | -- |
| 108.6 | 0.488 | 10.2 | 1.21 | 0.254 | -- | -- | -- | 0.682 | 5.78 | -- | -- | -- | -- |
| 101.88 | 0.47 | 10.2 | 0.905 | -- | 0.666 | -- | -- | 0.546 | -- | 17.9 | 4210 | -- | -- |
| 105.77 | 0.479 | 10.3 | -- | 0.251 | 1.08 | -- | -- | 0.236 | 6.13 | 13.03 | 24115 | -- | -- |
| 111.95 | 0.494 | 10.2 | 1.22 | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
| 147.23 | 0.568 | 10.2 | -- | 0.273 | -- | -- | -- | 0.547 | 5.58 | -- | -- | -- | -- |
| 107.84 | 0.484 | 10.3 | -- | -- | 1.08 | -- | -- | 0.235 | -- | 6.363 | 43028 | -- | -- |
| 151.11 | 0.574 | 10.2 | -- | -- | -- | -- | -- | 0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 4 | 87.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 12 |
| 6 | 87.68 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 7 | 87.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 5 |
| 8 | 87.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 17 | 88.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 18 | 88.39 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 25 | 88.57 | radiation | 20 | 90 | < th | dose independent | rect. | 4 | 11 |
| 33 | 88.63 | radiation | 10 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 52 | 88.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 16 |
| 58 | 88.84 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 61 | 88.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 63 | 88.86 | temperature | 25 | 4320 | > th | dose independent | sin | 8 | NA |
| 67 | 88.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 84 | 88.94 | temperature | 25 | 4320 | < th | dose independent | sin | 8 | NA |
| 95 | 88.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 107 | 89.03 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 125 | 89.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 19 |
| 136 | 89.12 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 142 | 89.14 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 158 | 89.20 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 219 | 89.35 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 23 |
| 222 | 89.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 21 |
| 242 | 89.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 268 | 89.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 282 | 89.46 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 287 | 89.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 291 | 89.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 298 | 89.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 323 | 89.49 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 346 | 89.51 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 403 | 89.56 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 4 |
| 409 | 89.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 417 | 89.57 | radiation | 20 | 90 | < th | dose independent | sin | 3 | NA |
| 494 | 89.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 17 |
| 551 | 89.68 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 13 |
| 579 | 89.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 14 |
| 714 | 89.81 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 741 | 89.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 8 |
| 768 | 89.88 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 2 |
| 777 | 89.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 3 |
| 785 | 89.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 865 | 89.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 919 | 90.05 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 941 | 90.07 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 949 | 90.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 981 | 90.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 22 |