Os04g0284600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to TAT-binding protein 1 (Fragment).
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Os04g0284600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to TAT-binding protein 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.08 | 0.376 | 7.17 | -0.923 | 0.112 | 0.734 | -0.374 | -1.45 | -0.36 | 21.4 | 24.99 | 97 | -- | -- |
| 64.63 | 0.377 | 7.15 | -0.734 | 0.174 | 0.612 | -0.348 | -- | -0.312 | 20.3 | 24.99 | 97 | -- | -- |
| 64.57 | 0.374 | 7.16 | -0.898 | 0.116 | 0.714 | -- | -1.32 | -0.357 | 21 | 24.97 | 97 | -- | -- |
| 65.01 | 0.378 | 7.15 | -0.724 | 0.175 | 0.612 | -- | -- | -0.313 | 20.4 | 24.97 | 97 | -- | -- |
| 65.25 | 0.376 | 7.16 | -0.891 | -- | 0.723 | -- | -1.32 | -0.353 | -- | 24.94 | 122 | -- | -- |
| 70.76 | 0.394 | 7.13 | -0.632 | 0.31 | -- | -0.00239 | -- | -0.263 | 17.1 | -- | -- | -- | -- |
| 70.76 | 0.394 | 7.13 | -0.632 | 0.31 | -- | -- | -- | -0.263 | 17.1 | -- | -- | -- | -- |
| 65.67 | 0.377 | 7.15 | -0.744 | -- | 0.616 | -- | -- | -0.337 | -- | 23.97 | 132 | -- | -- |
| 78.3 | 0.414 | 7.13 | -- | 0.203 | 0.434 | -- | -- | -0.221 | 18.8 | 24.97 | 97 | -- | -- |
| 75.78 | 0.407 | 7.13 | -0.644 | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
| 81.3 | 0.422 | 7.12 | -- | 0.321 | -- | -- | -- | -0.192 | 17 | -- | -- | -- | -- |
| 79.79 | 0.416 | 7.12 | -- | -- | 0.505 | -- | -- | -0.239 | -- | 24.3 | 123 | -- | -- |
| 86.71 | 0.435 | 7.12 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 62.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 4 | 62.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 8 | 62.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 10 | 62.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 11 | 62.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 27 | 63.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 67 | 63.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 71 | 63.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 78 | 63.43 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 83 | 63.45 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 109 | 63.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 2 |
| 133 | 63.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 147 | 63.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 7 |
| 156 | 63.78 | wind | 1 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 157 | 63.78 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 164 | 63.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 186 | 63.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 189 | 63.86 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 193 | 63.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 195 | 63.87 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 246 | 63.98 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 251 | 63.99 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 254 | 64.00 | wind | 1 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 274 | 64.03 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 288 | 64.06 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 291 | 64.07 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 303 | 64.09 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 307 | 64.10 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 313 | 64.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 328 | 64.13 | wind | 7 | 90 | < th | dose independent | rect. | 7 | 22 |
| 332 | 64.14 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 341 | 64.15 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 350 | 64.16 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 371 | 64.18 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 387 | 64.20 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 388 | 64.20 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 397 | 64.21 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 410 | 64.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 445 | 64.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 446 | 64.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 447 | 64.26 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 529 | 64.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 533 | 64.36 | temperature | 25 | 10 | > th | dose dependent | sin | 23 | NA |
| 543 | 64.37 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 556 | 64.38 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 559 | 64.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 621 | 64.43 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 642 | 64.46 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 668 | 64.48 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 682 | 64.50 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 693 | 64.51 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 711 | 64.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 755 | 64.56 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 803 | 64.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 834 | 64.63 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 838 | 64.63 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 17 |
| 871 | 64.65 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 880 | 64.66 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 17 | 15 |
| 904 | 64.67 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 912 | 64.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 913 | 64.68 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 936 | 64.69 | wind | 7 | 270 | < th | dose independent | rect. | 16 | 23 |
| 946 | 64.70 | temperature | 20 | 30 | > th | dose dependent | sin | 9 | NA |
| 980 | 64.72 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 999 | 64.74 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |