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Os04g0284500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.45 (0.0177) R2 : 0.316
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.597 (0.0464) R2dC : 0.249 R2C : 0.236
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.239 (0.0373) R2dN8 : 0.0797 R2N8 : 0.0669
σ : 0.334
deviance : 51
__
_____
C
peak time of C : 5.81
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.75 0.311 7.36 0.681 0.598 -0.0332 0.151 -1.94 0.422 5.81 21.7 3637 -- --
49.7 0.328 7.42 0.147 0.581 0.19 0.222 -- 0.364 5.7 23.5 10715 -- --
42.52 0.304 7.37 0.744 0.598 0.0444 -- -1.91 0.431 5.8 22.3 2305 -- --
48.68 0.325 7.42 0.352 0.609 0.42 -- -- 0.358 5.74 18.8 9764 -- --
60.8 0.363 7.38 0.803 -- 0.0668 -- -1.94 0.459 -- 22.58 2273 -- --
50.85 0.334 7.45 0.0683 0.595 -- 0.115 -- 0.247 5.8 -- -- -- --
50.88 0.334 7.45 0.0691 0.596 -- -- -- 0.247 5.81 -- -- -- --
64.95 0.375 7.43 0.48 -- 0.516 -- -- 0.378 -- 14.4 43905 -- --
49.5 0.328 7.44 -- 0.615 0.235 -- -- 0.271 5.82 12.8 24107 -- --
69.29 0.389 7.46 0.0875 -- -- -- -- 0.261 -- -- -- -- --
51 0.334 7.45 -- 0.597 -- -- -- 0.239 5.81 -- -- -- --
68.13 0.384 7.46 -- -- 0.214 -- -- 0.277 -- 13.1 25230 -- --
69.49 0.389 7.46 -- -- -- -- -- 0.251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.24 wind 3.0 43200 < th dose dependent rect. 11 1
3 40.87 wind 1.0 43200 < th dose independent rect. 11 1
5 41.01 wind 1.0 43200 > th dose independent rect. 23 3
6 41.10 wind 1.0 43200 > th dose independent rect. 11 1
8 41.14 wind 3.0 43200 < th dose dependent rect. 20 1
11 41.38 wind 1.0 43200 < th dose dependent rect. 8 18
12 41.42 wind 1.0 43200 < th dose independent rect. 23 3
13 41.47 wind 1.0 43200 > th dose independent rect. 8 5
15 41.49 humidity 80.0 14400 > th dose independent rect. 3 1
16 41.57 wind 1.0 43200 < th dose dependent rect. 11 15
19 41.60 humidity 90.0 14400 < th dose dependent rect. 3 1
23 41.74 wind 3.0 43200 < th dose independent rect. 11 3
33 41.86 wind 1.0 43200 < th dose independent rect. 8 4
35 41.88 humidity 80.0 14400 < th dose independent rect. 3 1
36 41.88 wind 3.0 43200 > th dose independent rect. 11 3
37 41.88 wind 3.0 43200 < th dose dependent rect. 24 2
40 41.91 wind 1.0 43200 > th dose independent rect. 2 1
42 41.93 humidity 80.0 43200 > th dose independent rect. 19 12
43 41.93 wind 3.0 43200 < th dose dependent rect. 20 8
49 41.97 wind 1.0 43200 < th dose independent rect. 21 5
54 41.99 wind 3.0 43200 < th dose independent rect. 20 1
55 41.99 wind 1.0 43200 < th dose independent rect. 19 7
59 42.01 humidity 80.0 43200 < th dose independent rect. 18 14
73 42.09 precipitation 0.1 43200 > th dose dependent rect. 19 1
83 42.15 humidity 80.0 43200 > th dose independent rect. 19 7
88 42.16 wind 3.0 43200 > th dose independent rect. 5 16
92 42.17 wind 3.0 43200 < th dose dependent rect. 18 4
96 42.19 wind 1.0 43200 > th dose independent rect. 21 5
98 42.19 wind 3.0 43200 < th dose independent rect. 5 16
99 42.20 wind 3.0 43200 < th dose independent rect. 9 7
102 42.21 wind 3.0 43200 > th dose independent sin 22 NA
103 42.21 humidity 60.0 43200 < th dose independent rect. 9 1
107 42.22 wind 3.0 43200 > th dose independent rect. 9 8
111 42.23 wind 3.0 43200 < th dose independent sin 23 NA
128 42.26 wind 3.0 43200 > th dose independent rect. 9 12
131 42.26 wind 3.0 43200 > th dose independent rect. 11 20
133 42.28 wind 3.0 43200 > th dose independent rect. 20 1
142 42.29 wind 3.0 43200 < th dose independent rect. 9 13
147 42.30 humidity 80.0 43200 < th dose independent sin 10 NA
165 42.32 wind 3.0 43200 < th dose independent rect. 11 20
167 42.32 wind 5.0 43200 < th dose dependent rect. 11 5
197 42.37 wind 1.0 43200 > th dose dependent rect. 15 1
207 42.39 humidity 80.0 43200 > th dose independent sin 11 NA
222 42.40 wind 9.0 43200 < th dose dependent rect. 15 1
238 42.42 wind 3.0 43200 < th dose independent rect. 6 11
240 42.42 wind 3.0 43200 > th dose independent rect. 1 20
242 42.43 wind 1.0 43200 > th dose independent rect. 19 7
250 42.43 wind 1.0 43200 < th dose dependent rect. 15 11
252 42.44 humidity 60.0 43200 > th dose independent rect. 9 1
259 42.44 wind 3.0 43200 < th dose independent rect. 1 20
260 42.44 wind 3.0 43200 < th dose dependent rect. 19 21
269 42.45 humidity 80.0 43200 < th dose dependent rect. 19 10
286 42.46 wind 5.0 43200 < th dose dependent rect. 11 15
316 42.48 wind 5.0 43200 < th dose dependent rect. 11 20
317 42.49 wind 1.0 43200 < th dose independent rect. 2 1
327 42.49 wind 5.0 43200 < th dose dependent rect. 11 17
339 42.50 wind 5.0 43200 < th dose dependent rect. 11 12
397 42.54 wind 5.0 43200 < th dose dependent sin 21 NA
400 42.54 wind 3.0 43200 < th dose dependent rect. 8 23
455 42.57 wind 3.0 43200 < th dose dependent rect. 3 23
478 42.59 wind 1.0 43200 < th dose dependent sin 17 NA
501 42.61 wind 3.0 43200 < th dose independent rect. 5 21
545 42.63 wind 3.0 43200 < th dose dependent rect. 15 22
572 42.66 humidity 80.0 43200 < th dose independent rect. 23 10
577 42.66 wind 3.0 43200 > th dose independent rect. 5 21
588 42.67 precipitation 0.1 43200 > th dose independent rect. 19 1
603 42.67 wind 3.0 43200 < th dose dependent sin 13 NA
622 42.68 wind 3.0 43200 < th dose dependent rect. 6 10
627 42.69 humidity 80.0 43200 > th dose independent rect. 24 9
644 42.69 wind 3.0 43200 < th dose dependent no NA NA
670 42.71 wind 1.0 43200 < th dose independent rect. 16 10
788 42.77 wind 3.0 43200 < th dose dependent rect. 11 23
789 42.77 wind 3.0 43200 < th dose dependent rect. 23 23
843 42.81 radiation 1.0 43200 < th dose dependent rect. 17 1
854 42.82 radiation 1.0 43200 < th dose independent rect. 17 5
865 42.83 wind 3.0 43200 < th dose independent no NA NA
866 42.83 radiation 1.0 43200 < th dose independent rect. 17 2
892 42.84 wind 3.0 43200 > th dose independent rect. 15 8
908 42.85 precipitation 0.1 43200 < th dose independent rect. 19 1
915 42.85 precipitation 0.1 43200 < th dose dependent rect. 19 1
925 42.86 wind 3.0 43200 > th dose independent rect. 16 6
937 42.87 radiation 40.0 43200 > th dose independent rect. 11 1
962 42.89 wind 3.0 43200 > th dose independent no NA NA
964 42.89 radiation 1.0 43200 > th dose independent rect. 5 5
965 42.89 radiation 1.0 43200 < th dose independent rect. 5 5
976 42.89 wind 3.0 43200 < th dose independent rect. 18 23