Os04g0284100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0284100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.09 | 0.194 | 9.59 | -0.0692 | 0.228 | -0.568 | -0.134 | -0.158 | 0.0974 | 5.01 | 0.7558 | 324 | -- | -- |
| 17.08 | 0.192 | 9.59 | -0.0635 | 0.2 | -0.574 | -0.036 | -- | 0.103 | 4.62 | -3.075 | 362 | -- | -- |
| 17.08 | 0.192 | 9.59 | -0.0646 | 0.201 | -0.572 | -- | -0.0332 | 0.102 | 4.58 | -1.356 | 362 | -- | -- |
| 17.06 | 0.192 | 9.59 | -0.0647 | 0.227 | -0.545 | -- | -- | 0.103 | 4.13 | 2.764 | 375 | -- | -- |
| 17.71 | 0.196 | 9.59 | -0.0482 | -- | -0.773 | -- | 0.00799 | 0.124 | -- | -27.46 | 405 | -- | -- |
| 20.8 | 0.214 | 9.6 | -0.0926 | 0.573 | -- | 0.0391 | -- | 0.0546 | 3.71 | -- | -- | -- | -- |
| 20.8 | 0.214 | 9.6 | -0.0932 | 0.573 | -- | -- | -- | 0.0544 | 3.72 | -- | -- | -- | -- |
| 17.71 | 0.196 | 9.59 | -0.0484 | -- | -0.772 | -- | -- | 0.124 | -- | -27.85 | 405 | -- | -- |
| 17.17 | 0.193 | 9.59 | -- | 0.244 | -0.534 | -- | -- | 0.11 | 4 | 5.057 | 375 | -- | -- |
| 38.96 | 0.292 | 9.6 | -0.0694 | -- | -- | -- | -- | 0.0696 | -- | -- | -- | -- | -- |
| 21.03 | 0.215 | 9.6 | -- | 0.571 | -- | -- | -- | 0.0647 | 3.72 | -- | -- | -- | -- |
| 17.77 | 0.196 | 9.59 | -- | -- | -0.773 | -- | -- | 0.129 | -- | -30.7 | 405 | -- | -- |
| 39.09 | 0.292 | 9.6 | -- | -- | -- | -- | -- | 0.0773 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.73 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 16.88 | radiation | 40 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 4 | 16.94 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 13 | 17.11 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 15 | 17.11 | radiation | 40 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 19 | 17.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 29 | 17.16 | radiation | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 43 | 17.21 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 47 | 17.22 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 48 | 17.22 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 117 | 17.24 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 141 | 17.27 | radiation | 40 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 142 | 17.28 | radiation | 20 | 720 | < th | dose independent | rect. | 9 | 1 |
| 155 | 17.29 | temperature | 30 | 270 | < th | dose independent | sin | 4 | NA |
| 158 | 17.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 159 | 17.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 166 | 17.30 | radiation | 20 | 270 | < th | dose independent | rect. | 17 | 22 |
| 167 | 17.30 | radiation | 30 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 179 | 17.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 181 | 17.31 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 184 | 17.32 | temperature | 30 | 270 | > th | dose independent | sin | 4 | NA |
| 199 | 17.34 | radiation | 20 | 720 | < th | dose independent | rect. | 8 | 3 |
| 203 | 17.35 | radiation | 30 | 720 | < th | dose dependent | rect. | 8 | 3 |
| 343 | 17.40 | radiation | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 366 | 17.41 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 19 |
| 368 | 17.41 | radiation | 40 | 270 | > th | dose independent | rect. | 12 | 23 |
| 396 | 17.43 | radiation | 40 | 270 | > th | dose independent | sin | 12 | NA |
| 405 | 17.44 | radiation | 20 | 270 | > th | dose independent | rect. | 7 | 10 |
| 409 | 17.44 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 13 |
| 423 | 17.44 | radiation | 40 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 432 | 17.45 | radiation | 20 | 270 | > th | dose independent | no | NA | NA |
| 527 | 17.45 | radiation | 1 | 270 | > th | dose dependent | sin | 23 | NA |
| 540 | 17.46 | radiation | 40 | 270 | < th | dose dependent | sin | 23 | NA |
| 562 | 17.48 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 591 | 17.49 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 11 |
| 612 | 17.50 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 23 |
| 632 | 17.51 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 7 |
| 636 | 17.51 | radiation | 20 | 720 | < th | dose independent | rect. | 2 | 10 |
| 658 | 17.51 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 662 | 17.52 | radiation | 10 | 720 | > th | dose independent | sin | 8 | NA |
| 680 | 17.52 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 806 | 17.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 816 | 17.57 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 851 | 17.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 858 | 17.58 | radiation | 20 | 270 | > th | dose independent | sin | 23 | NA |
| 921 | 17.59 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 922 | 17.59 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 7 |
| 928 | 17.59 | radiation | 40 | 720 | < th | dose dependent | sin | 8 | NA |
| 934 | 17.59 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 13 |
| 958 | 17.59 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 973 | 17.60 | radiation | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 977 | 17.60 | radiation | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |