Os04g0282000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0282000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.02 | 0.382 | 7.46 | 0.581 | 0.496 | 2.09 | -0.542 | -0.439 | 0.507 | 7.67 | 18.83 | 237 | -- | -- |
| 66.17 | 0.379 | 7.45 | 0.663 | 0.487 | 2.07 | -0.497 | -- | 0.531 | 7.71 | 18.8 | 231 | -- | -- |
| 66.72 | 0.383 | 7.47 | 0.64 | 0.227 | 2.17 | -- | -0.192 | 0.506 | 3.93 | 18.8 | 238 | -- | -- |
| 66.75 | 0.381 | 7.47 | 0.643 | 0.239 | 2.29 | -- | -- | 0.507 | 4.33 | 17.7 | 28 | -- | -- |
| 68.72 | 0.388 | 7.46 | 0.691 | -- | 1.98 | -- | -0.175 | 0.544 | -- | 18.8 | 238 | -- | -- |
| 133.67 | 0.542 | 7.38 | 1.13 | 0.578 | -- | 0.222 | -- | 0.882 | 13.8 | -- | -- | -- | -- |
| 133.84 | 0.542 | 7.38 | 1.14 | 0.577 | -- | -- | -- | 0.883 | 13.7 | -- | -- | -- | -- |
| 68.63 | 0.386 | 7.46 | 0.693 | -- | 2.1 | -- | -- | 0.549 | -- | 17.6 | 9 | -- | -- |
| 76.35 | 0.407 | 7.49 | -- | 0.332 | 2.6 | -- | -- | 0.403 | 4.23 | 17.3 | 33 | -- | -- |
| 154.09 | 0.58 | 7.39 | 1.12 | -- | -- | -- | -- | 0.87 | -- | -- | -- | -- | -- |
| 168.05 | 0.606 | 7.41 | -- | 0.556 | -- | -- | -- | 0.756 | 13.6 | -- | -- | -- | -- |
| 80.49 | 0.418 | 7.48 | -- | -- | 2.33 | -- | -- | 0.443 | -- | 17.1 | 12 | -- | -- |
| 186.93 | 0.638 | 7.42 | -- | -- | -- | -- | -- | 0.746 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 5 | 65.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 11 | 66.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 12 | 66.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 21 | 67.06 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 25 | 67.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 77 | 68.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 90 | 68.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 106 | 69.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 108 | 69.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 112 | 69.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 124 | 69.69 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 137 | 69.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 148 | 70.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 152 | 70.22 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 159 | 70.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 168 | 70.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 202 | 70.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 214 | 71.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 216 | 71.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 224 | 71.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 273 | 72.21 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 289 | 72.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 18 |
| 300 | 72.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 321 | 72.70 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 322 | 72.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 336 | 72.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 343 | 72.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 359 | 72.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 424 | 73.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 457 | 73.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 488 | 73.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 685 | 74.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 859 | 74.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |