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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0280800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.0335) R2 : 0.0315
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0706) R2dN8 : 0.0407 R2N8 : 0.0315
σ : 0.631
deviance : 182.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.65 0.61 3.64 0.579 0.281 0.586 0.379 2.44 0.362 13.7 20.14 4972 -- --
173.65 0.614 3.74 0.186 0.265 0.272 0.3 -- 0.269 13.5 26.2 4577 -- --
169.18 0.606 3.64 0.589 0.279 0.573 -- 2.4 0.363 13.7 20.16 4848 -- --
174.08 0.614 3.73 0.202 0.274 0.277 -- -- 0.264 13.7 26.23 4558 -- --
173.83 0.614 3.64 0.588 -- 0.536 -- 2.34 0.366 -- 20.14 4668 -- --
175.6 0.621 3.73 0.298 0.271 -- 0.352 -- 0.309 13.9 -- -- -- --
176.08 0.621 3.72 0.308 0.271 -- -- -- 0.311 13.8 -- -- -- --
178.12 0.624 3.74 0.263 -- 0.154 -- -- 0.257 -- 26.23 4558 -- --
174.88 0.616 3.74 -- 0.31 0.339 -- -- 0.228 13.5 26.22 3669 -- --
180.53 0.628 3.73 0.297 -- -- -- -- 0.305 -- -- -- -- --
178.59 0.625 3.73 -- 0.265 -- -- -- 0.277 13.8 -- -- -- --
179.6 0.624 3.74 -- -- 0.334 -- -- 0.234 -- 26.3 4584 -- --
182.86 0.631 3.73 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.08 wind 1 30 < th dose dependent rect. 17 10
3 163.11 wind 1 30 < th dose dependent rect. 21 6
9 163.47 temperature 25 10 > th dose independent rect. 18 15
16 164.81 wind 1 10 < th dose independent rect. 22 5
17 164.89 wind 1 10 < th dose independent rect. 17 10
29 165.33 temperature 25 10 > th dose independent rect. 20 13
38 165.63 wind 1 270 < th dose dependent rect. 17 6
39 165.65 wind 1 270 < th dose dependent rect. 20 3
43 165.72 wind 1 30 < th dose dependent rect. 12 15
44 165.73 temperature 20 270 > th dose dependent rect. 3 3
45 165.75 wind 1 10 < th dose independent rect. 11 16
49 165.93 wind 1 30 < th dose dependent rect. 10 17
53 166.08 temperature 25 4320 < th dose independent rect. 3 1
77 166.52 atmosphere 1000 10 > th dose independent rect. 3 23
90 166.64 wind 1 10 < th dose independent rect. 7 20
94 166.66 wind 1 30 < th dose dependent rect. 7 20
95 166.68 temperature 25 4320 > th dose dependent rect. 2 6
100 166.79 temperature 25 4320 > th dose independent rect. 3 1
110 166.90 temperature 25 4320 < th dose independent rect. 2 6
130 167.07 temperature 25 10 > th dose independent rect. 24 9
136 167.11 temperature 25 4320 > th dose dependent rect. 23 10
137 167.12 wind 1 270 < th dose independent rect. 21 2
149 167.28 temperature 25 4320 > th dose independent rect. 3 5
152 167.33 temperature 20 270 > th dose independent rect. 3 2
154 167.34 temperature 20 4320 > th dose independent rect. 21 3
162 167.42 temperature 25 10 > th dose independent sin 10 NA
164 167.42 atmosphere 1000 90 < th dose independent rect. 4 3
165 167.44 temperature 20 4320 > th dose independent rect. 22 1
166 167.45 atmosphere 1000 90 < th dose dependent rect. 5 2
169 167.48 temperature 20 4320 < th dose independent rect. 21 3
191 167.62 wind 1 90 > th dose independent rect. 18 15
234 167.86 atmosphere 1000 10 < th dose dependent rect. 4 4
236 167.88 atmosphere 1005 90 > th dose independent rect. 1 2
240 167.88 atmosphere 1000 90 > th dose independent rect. 18 15
246 167.94 temperature 25 10 < th dose independent sin 10 NA
248 167.94 wind 1 30 > th dose dependent rect. 18 15
258 167.99 atmosphere 1000 10 < th dose independent rect. 4 2
262 168.00 atmosphere 1000 10 < th dose dependent rect. 4 2
269 168.03 temperature 20 4320 > th dose independent rect. 20 8
283 168.07 temperature 25 10 > th dose independent rect. 15 18
289 168.10 temperature 25 4320 > th dose independent rect. 24 9
291 168.10 atmosphere 1000 10 > th dose dependent rect. 4 6
299 168.12 temperature 20 4320 < th dose independent rect. 20 8
328 168.16 temperature 25 10 > th dose independent rect. 4 5
333 168.19 atmosphere 1000 720 > th dose independent rect. 3 2
350 168.23 wind 3 1440 > th dose dependent rect. 8 2
379 168.27 temperature 10 4320 > th dose dependent rect. 23 1
382 168.28 temperature 30 4320 < th dose dependent rect. 23 1
393 168.30 temperature 20 90 > th dose dependent rect. 1 2
398 168.31 humidity 90 1440 > th dose independent rect. 4 3
407 168.34 temperature 20 4320 > th dose independent sin 13 NA
420 168.35 humidity 90 1440 > th dose independent rect. 3 6
451 168.39 atmosphere 1000 90 > th dose dependent rect. 1 2
469 168.42 humidity 90 1440 > th dose independent rect. 3 8
503 168.46 temperature 20 270 < th dose independent rect. 5 7
508 168.47 temperature 20 4320 < th dose independent sin 12 NA
533 168.49 temperature 25 4320 < th dose dependent rect. 3 1
566 168.52 temperature 15 90 > th dose independent rect. 3 22
572 168.53 temperature 20 270 < th dose independent rect. 5 15
577 168.53 wind 5 30 < th dose dependent rect. 21 16
594 168.55 temperature 10 4320 > th dose dependent rect. 3 1
638 168.58 wind 3 30 < th dose dependent rect. 5 23
650 168.59 wind 3 1440 > th dose dependent rect. 6 4
651 168.59 wind 5 1440 > th dose dependent rect. 24 10
683 168.62 humidity 90 1440 < th dose independent rect. 4 3
714 168.64 wind 9 10 < th dose independent rect. 3 23
752 168.66 temperature 20 270 > th dose independent rect. 2 15
767 168.67 atmosphere 1000 90 > th dose independent rect. 3 13
771 168.67 wind 1 30 > th dose independent rect. 11 23
814 168.70 temperature 20 4320 > th dose independent rect. 1 1
819 168.70 wind 5 1440 < th dose independent rect. 24 10
830 168.71 wind 5 1440 < th dose independent rect. 9 1
865 168.73 temperature 20 270 > th dose independent sin 0 NA
881 168.74 wind 5 1440 > th dose independent rect. 24 10
884 168.74 temperature 20 270 > th dose independent rect. 2 17
927 168.76 atmosphere 1000 270 > th dose independent rect. 3 6
939 168.77 wind 1 90 > th dose independent rect. 3 22
967 168.78 temperature 25 10 > th dose dependent rect. 20 12